This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.411836 (24 seq.)
>W131063217
ANKN01000034
Cyanobacteriota
Prochlorothrix hollandica PCC 9006 [ANKN]
47682
47611
-
Val
CAC
[ENA]
¡û
>W131063300
ANKO01000201
Cyanobacteriota
Oscillatoria sp. PCC 10802 [ANKO]
2096
2025
-
Val
CAC
[ENA]
¡û
>C171064208
CP017599
Cyanobacteriota
Moorena producens PAL-8-15-08-1 [CP017599]
9388256
9388329
+
Val
CAC
-
¡û
>W131035994
AJUB01000005
Cyanobacteriota
Leptolyngbyaceae cyanobacterium JSC-12 JSC-12 [AJUB]
1254117
1254046
-
Val
CAC
[ENA]
¡û
>W131166607
ARCP01000005
Cyanobacteriota
filamentous cyanobacterium ESFC-1 [ARCP]
164438
164509
+
Val
CAC
[ENA]
¡û
>WENV180636058
OCRE01049861
[OCRE] marine metagenome; Seawater
80
9
-
Val
CAC
[ENA]
¡û
>WENV181854266
OGWJ01036588
[OGWJ] freshwater metagenome; freshwater
218
147
-
Val
CAC
[ENA]
¡û
>W08011508
ABVI01000011
Cyanobacteriota
Rippkaea orientalis PCC 8802 [ABVI]
58914
58843
-
Val
CAC
[ENA]
¡û
>WENV170640215
JFJP01014841
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
262
191
-
Val
CAC
[ENA]
¡û
>C09103643
CP001287
Cyanobacteriota
Rippkaea orientalis PCC 8801 [CP001287]
1886498
1886427
-
Val
CAC
[Ensembl]
¡û
>W2110228101
JACJPD010000045
Cyanobacteriota
Microcoleus sp. FACHB-53 [JACJPD]
144170
144241
+
Val
CAC
[ENA]
¡û
>W2110230384
JACJQZ010000002
Cyanobacteriota
Desertifilum sp. FACHB-1129 [JACJQZ]
89403
89474
+
Val
CAC
[ENA]
¡û
>W2110230452
JACJRA010000005
Cyanobacteriota
Desertifilum sp. FACHB-866 [JACJRA]
89671
89742
+
Val
CAC
[ENA]
¡û
>W2110405700
JAECZA010000290
Cyanobacteriota
Dendronalium phyllosphericum CENA369 [JAECZA]
47006
47079
+
Val
CAC
[ENA]
¡û
>W2110405793
JAECZC010000075
Cyanobacteriota
Amazonocrinis nigriterrae CENA67 [JAECZC]
35482
35411
-
Val
CAC
[ENA]
¡û
>C211195713
CP064923
Cyanobacteriota
Acaryochloris marina S15 [CP064923]
1945228
1945157
-
Val
CAC
-
¡û
>C231025138
AP026075
Cyanobacteriota
Acaryochloris marina MBIC10699 [AP026075]
1973845
1973773
-
Val
CAC
-
¡û
>C231123258
CP071717
Cyanobacteriota
Acaryochloris sp. 'Moss Beach' [CP071717]
4801950
4801879
-
Val
CAC
-
¡û
>C231139432
CP075171
Cyanobacteriota
Leptodesmis sichuanensis PKUAC-SCTA121 [CP075171]
144748
144675
-
Val
CAC
-
¡û
>C10104735
CP001701
Cyanobacteriota
Rippkaea orientalis [CP001701]
1861117
1861046
-
Val
CAC
[Ensembl]
¡û
>W11160140
AFEJ01000325
Cyanobacteriota
Acaryochloris sp. CCMEE 5410 [AFEJ]
39684
39755
+
Val
CAC
[ENA]
¡û
>C131004920
CP003642
Cyanobacteriota
Cylindrospermum stagnale PCC 7417 [CP003642]
6636613
6636684
+
Val
CAC
[Ensembl]
¡û
>C131004889
CP003630
Cyanobacteriota
Allocoleopsis franciscana PCC 7113 [CP003630]
4227566
4227495
-
Val
CAC
[Ensembl]
¡û
>W1710005630
ALVQ01000007
Cyanobacteriota
Spirulina major PCC 6313 [ALVQ]
669180
669251
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK