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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.411983 (140 seq.)
>W1710875465
LMOK01000001
Actinomycetota
Leifsonia sp. Leaf325 [LMOK]
606862
606935
+
Gly
TCC
[ENA]
¡û
>W1710876066
LMOX01000003
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
205739
205810
+
Gly
TCC
[ENA]
¡û
>W1710876232
LMPB01000001
Actinomycetota
Frigoribacterium sp. Leaf172 [LMPB]
1311334
1311261
-
Gly
TCC
[ENA]
¡û
>W1711008595
LQQC01000010
Actinomycetota
Brevibacterium ravenspurgense [LQQC]
510006
509935
-
Gly
TCC
[ENA]
¡û
>W1711079589
LSOE01000003
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
78342
78415
+
Gly
TCC
[ENA]
¡û
>W1711351285
MDCH01000007
Actinomycetota
Rhodococcus erythropolis [MDCH]
29298
29225
-
Gly
TCC
[ENA]
¡û
>W1711360800
MDJY01000049
Actinomycetota
Clavibacter michiganensis [MDJY]
26961
26888
-
Gly
TCC
[ENA]
¡û
>W1711385599
MEEJ01000008
Actinomycetota
Microbacterium sp. SCN 70-200 [MEEJ]
87865
87792
-
Gly
TCC
[ENA]
¡û
>W1711385660
MEEK01000058
Actinomycetota
Microbacterium sp. SCN 70-27 [MEEK]
10029
9956
-
Gly
TCC
[ENA]
¡û
>W1711385685
MEEL01000032
Actinomycetota
Microbacterium sp. SCN 69-37 [MEEL]
29823
29750
-
Gly
TCC
[ENA]
¡û
>W1711501799
MKSA01000103
Actinomycetota
Microbacterium sp. 70-38 [MKSA]
2774
2847
+
Gly
TCC
[ENA]
¡û
>W1711503468
MKTQ01000014
Actinomycetota
Microbacterium sp. 70-16 [MKTQ]
529282
529355
+
Gly
TCC
[ENA]
¡û
>W1711705219
MSQF01000032
Actinomycetota
Rhodococcus sp. YL-0 [MSQF]
20983
20910
-
Gly
TCC
[ENA]
¡û
>C171127438
CP021992
Actinomycetota
Cryobacterium sp. LW097 [CP021992]
2118509
2118582
+
Gly
TCC
-
¡û
>WENV180017275
FSWR01000052
[FSWR] metagenome; soil
55382
55454
+
Gly
TCC
[ENA]
¢þ
>WENV180023975
FTIF01005323
[FTIF] metagenome; soil
24959
24887
-
Gly
TCC
[ENA]
¢þ
>WENV180104175
OAPB01107036
[OAPB] marine metagenome; Sterile flask
138
67
-
Gly
TCC
[ENA]
¢þ
>WENV180113887
OAPR01044029
[OAPR] marine metagenome; seawater
49
120
+
Gly
TCC
[ENA]
¢þ
>WENV180214592
OBAP01017277
[OBAP] marine metagenome; ENVO:00002010 for 'seawater
148
77
-
Gly
TCC
[ENA]
¢þ
>WENV180391672
OBPN01018254
[OBPN] marine metagenome; seawater
312
240
-
Gly
TCC
[ENA]
¢þ
>WENV180394315
OBPS01001056
[OBPS] marine metagenome; ENVO:00002010 seawater
24
97
+
Gly
TCC
[ENA]
¢þ
>WENV180395032
OBPT01000640
[OBPT] marine metagenome; ENVO:00002010 seawater
5401
5328
-
Gly
TCC
[ENA]
¢þ
>WENV180635307
OCRD01007713
[OCRD] marine metagenome; seawater
434
507
+
Gly
TCC
[ENA]
¢þ
>WENV180693037
OCZS010950640
[OCZS] soil metagenome; soil
165
236
+
Gly
TCC
[ENA]
¢þ
>WENV181126279
OEFV01035406
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
184
257
+
Gly
TCC
[ENA]
¢þ
>WENV181391638
OFRT01031971
[OFRT] seawater metagenome; seawater
392
463
+
Gly
TCC
[ENA]
¢þ
>WENV182540456
OJAJ01002149
[OJAJ] seawater metagenome; Sea water
1462
1532
+
Gly
TCC
[ENA]
¢þ
>WENV182540840
OJAQ01000038
[OJAQ] seawater metagenome; Sea water
15852
15923
+
Gly
TCC
[ENA]
¢þ
>WENV182542881
OJAZ01005109
[OJAZ] seawater metagenome; Sea water
2564
2635
+
Gly
TCC
[ENA]
¢þ
>WENV182544257
OJBF01000486
[OJBF] seawater metagenome; Sea water
3240
3169
-
Gly
TCC
[ENA]
¢þ
>WENV182548500
OJBW01000905
[OJBW] seawater metagenome; Sea water
707
636
-
Gly
TCC
[ENA]
¢þ
>WENV182552646
OJCN01000564
[OJCN] seawater metagenome; Sea water
723
794
+
Gly
TCC
[ENA]
¢þ
>WENV182553127
OJCR01000062
[OJCR] seawater metagenome; Sea water
23477
23406
-
Gly
TCC
[ENA]
¢þ
>WENV182554111
OJCT01001415
[OJCT] seawater metagenome; Sea water
2241
2170
-
Gly
TCC
[ENA]
¢þ
>WENV182557323
OJDI01007607
[OJDI] seawater metagenome; Sea water
1194
1123
-
Gly
TCC
[ENA]
¢þ
>WENV182558471
OJDM01005364
[OJDM] seawater metagenome; Sea water
231
302
+
Gly
TCC
[ENA]
¢þ
>WENV182561561
OJDX01000002
[OJDX] seawater metagenome; Sea water
81152
81223
+
Gly
TCC
[ENA]
¢þ
>WENV182561909
OJDY01000005
[OJDY] seawater metagenome; Sea water
456
385
-
Gly
TCC
[ENA]
¢þ
>WENV182562628
OJDZ01027429
[OJDZ] seawater metagenome; Sea water
149
78
-
Gly
TCC
[ENA]
¢þ
>WENV182562642
OJEA01000005
[OJEA] seawater metagenome; Sea water
63664
63735
+
Gly
TCC
[ENA]
¢þ
>WENV182563019
OJEB01000001
[OJEB] seawater metagenome; Sea water
85196
85125
-
Gly
TCC
[ENA]
¢þ
>WENV182564036
OJEE01000008
[OJEE] seawater metagenome; Sea water
83658
83729
+
Gly
TCC
[ENA]
¢þ
>WENV182568983
OJEY01000003
[OJEY] seawater metagenome; Sea water
90224
90153
-
Gly
TCC
[ENA]
¢þ
>WENV182569859
OJFB01000970
[OJFB] seawater metagenome; Sea water
4537
4608
+
Gly
TCC
[ENA]
¢þ
>WENV182571146
OJFG01000688
[OJFG] seawater metagenome; Sea water
4503
4432
-
Gly
TCC
[ENA]
¢þ
>WENV182574545
OJFS01000016
[OJFS] seawater metagenome; Sea water
30850
30921
+
Gly
TCC
[ENA]
¢þ
>WENV182575833
OJFW01005512
[OJFW] seawater metagenome; Sea water
497
568
+
Gly
TCC
[ENA]
¢þ
>WENV182576702
OJFY01002094
[OJFY] seawater metagenome; Sea water
1638
1709
+
Gly
TCC
[ENA]
¢þ
>WENV182577963
OJGM01000114
[OJGM] seawater metagenome; Sea water
8762
8691
-
Gly
TCC
[ENA]
¢þ
>WENV182580747
OJGW01010752
[OJGW] seawater metagenome; Sea water
650
579
-
Gly
TCC
[ENA]
¢þ
>WENV182582070
OJHA01000001
[OJHA] seawater metagenome; Sea water
60881
60952
+
Gly
TCC
[ENA]
¢þ
>WENV182582415
OJHB01000076
[OJHB] seawater metagenome; Sea water
4496
4567
+
Gly
TCC
[ENA]
¢þ
>WENV182583173
OJHD01000818
[OJHD] seawater metagenome; Sea water
1034
963
-
Gly
TCC
[ENA]
¢þ
>WENV182586754
OJHK01004408
[OJHK] seawater metagenome; Sea water
450
521
+
Gly
TCC
[ENA]
¢þ
>WENV182587527
OJHN01000003
[OJHN] seawater metagenome; Sea water
38427
38356
-
Gly
TCC
[ENA]
¢þ
>WENV182592306
OJIR01000001
[OJIR] seawater metagenome; Sea water
87065
87136
+
Gly
TCC
[ENA]
¢þ
>W141282878
JAJB01000007
Actinomycetota
Brevibacterium sp. VCM10 [JAJB]
60231
60158
-
Gly
TCC
[ENA]
¡û
>WENV183054492
OLGU01000002
[OLGU] seawater metagenome; Sea water
126536
126607
+
Gly
TCC
[ENA]
¢þ
>WENV183055005
OLGW01000584
[OLGW] seawater metagenome; Sea water
2449
2378
-
Gly
TCC
[ENA]
¢þ
>WENV183059148
OLHS01010904
[OLHS] seawater metagenome; Sea water
410
339
-
Gly
TCC
[ENA]
¢þ
>WENV183059204
OLHU01000006
[OLHU] seawater metagenome; Sea water
76497
76426
-
Gly
TCC
[ENA]
¢þ
>WENV183060158
OLHX01000002
[OLHX] seawater metagenome; Sea water
47766
47837
+
Gly
TCC
[ENA]
¢þ
>WENV183511406
OMJG01000206
[OMJG] food metagenome; Cotija cheese
445
518
+
Gly
TCC
[ENA]
¢þ
>WENV183619135
OOFP01031748
[OOFP] marine metagenome; seawater
193
122
-
Gly
TCC
[ENA]
¢þ
>WENV183725891
PJQF01031704
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
188
115
-
Gly
TCC
[ENA]
¢þ
>WENV183735160
PJUA01001489
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
3569
3496
-
Gly
TCC
[ENA]
¢þ
>WENV170120145
CENJ01195861
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
260
187
-
Gly
TCC
[ENA]
¢þ
>WENV170370383
CETR01097060
[CETR] marine metagenome genome assembly TARA_112_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
491
564
+
Gly
TCC
[ENA]
¢þ
>WENV170568446
FLMP01040687
[FLMP] seawater metagenome; seawater
179
250
+
Gly
TCC
[ENA]
¢þ
>WENV170570735
FLOH01000020
[FLOH] marine metagenome; water
194374
194447
+
Gly
TCC
[ENA]
¢þ
>WENV170571823
FLOH01000328
[FLOH] marine metagenome; water
111235
111306
+
Gly
TCC
[ENA]
¢þ
>WENV170625362
FUWD013196637
[FUWD] metagenome; unknown
1836
1765
-
Gly
TCC
[ENA]
¢þ
>WENV170626760
FUWD013229317
[FUWD] metagenome; unknown
41909
41838
-
Gly
TCC
[ENA]
¢þ
>WENV170626982
FUWD013230618
[FUWD] metagenome; unknown
34703
34630
-
Gly
TCC
[ENA]
¢þ
>WENV170627279
FUWD013232463
[FUWD] metagenome; unknown
42148
42077
-
Gly
TCC
[ENA]
¢þ
>WENV170633602
FUWD013399284
[FUWD] metagenome; unknown
1836
1765
-
Gly
TCC
[ENA]
¢þ
>WENV170784309
MCHG01000706
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
2469
2396
-
Gly
TCC
[ENA]
¢þ
>WENV170826595
MDSY01113286
[MDSY] marine metagenome; seawater
2036
2109
+
Gly
TCC
[ENA]
¢þ
>WENV170921134
MDTG01008892
[MDTG] marine metagenome; seawater
3257
3184
-
Gly
TCC
[ENA]
¢þ
>WENV170950671
MEHZ011510098
[MEHZ] marine metagenome; marine surface water
804
733
-
Gly
TCC
[ENA]
¢þ
>C181115725
CP025299
Actinomycetota
Microbacterium hominis SJTG1 [CP025299]
2029802
2029729
-
Gly
TCC
-
¡û
>C191031901
CP025331
Actinomycetota
Brevibacterium aurantiacum SMQ-1418 [CP025331]
1924986
1925059
+
Gly
TCC
-
¡û
>C191032044
CP025334
Actinomycetota
Brevibacterium aurantiacum SMQ-1420 [CP025334]
2034356
2034428
+
Gly
TCC
-
¡û
>C191071533
CP030033
Actinomycetota
Cryobacterium soli GCJ02 [CP030033]
43286
43213
-
Gly
TCC
-
¡û
>W141773475
JOIM01000004
Actinomycetota
Rhodococcus opacus [JOIM]
432028
432101
+
Gly
TCC
[ENA]
¡û
>W1910331275
FSLI01000203
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 1079 [FSLI]
6468
6541
+
Gly
TCC
[ENA]
¡û
>W1910500349
FXZE01000044
Actinomycetota
Brevibacterium antiquum P10 [FXZE]
1103
1176
+
Gly
TCC
[ENA]
¡û
>W1910500521
FXZI01000004
Actinomycetota
Brevibacterium aurantiacum [FXZI]
14334
14261
-
Gly
TCC
[ENA]
¡û
>W1910785517
MQTR01000170
Actinomycetota
Cryobacterium sp. SO1 [MQTR]
47871
47798
-
Gly
TCC
[ENA]
¡û
>W1910839842
MZMQ01000001
Actinomycetota
Clavibacter michiganensis subsp. tessellarius ATCC 33566 [MZMQ]
2834288
2834361
+
Gly
TCC
[ENA]
¡û
>W1810168887
PJJP01000039
Actinomycetota
Cryobacterium sp. N22 [PJJP]
317986
318059
+
Gly
TCC
[ENA]
¡û
>W1810169034
PJJS01000054
Actinomycetota
Cryobacterium sp. M96 [PJJS]
249430
249357
-
Gly
TCC
[ENA]
¡û
>W1810169122
PJJU01000057
Actinomycetota
Cryobacterium sp. M25 [PJJU]
244729
244654
-
Gly
TCC
[ENA]
¡û
>W1810169139
PJJV01000065
Actinomycetota
Cryobacterium sp. M23 [PJJV]
48426
48353
-
Gly
TCC
[ENA]
¡û
>W1810242592
PPXD01000007
Actinomycetota
Cryobacterium zongtaii TMN-42 [PPXD]
378248
378321
+
Gly
TCC
[ENA]
¡û
>W1810242652
PPXE01000022
Actinomycetota
Cryobacterium zongtaii TMN-39-1 [PPXE]
314721
314794
+
Gly
TCC
[ENA]
¡û
>W1810242698
PPXF01000058
Actinomycetota
Cryobacterium zongtaii TMB1-8 [PPXF]
653897
653970
+
Gly
TCC
[ENA]
¡û
>SRA1003886
SRR002328.9101
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
10
83
+
Gly
TCC
[SRA]
>W1810582420
QEUH01000007
Actinomycetota
Rhodococcus sp. AQ5-07 [QEUH]
300162
300235
+
Gly
TCC
[ENA]
¡û
>W1810627271
QHLY01000012
Actinomycetota
Cryobacterium arcticum SK-1 [QHLY]
960017
960090
+
Gly
TCC
[ENA]
¡û
>SRA1023326
SRR035084.72218
454 Sequencing (SRP001805)
361
290
-
Gly
TCC
[SRA]
>SRA1023782
SRR035084.174659
454 Sequencing (SRP001805)
270
199
-
Gly
TCC
[SRA]
>SRA1023794
SRR035084.177681
454 Sequencing (SRP001805)
3
74
+
Gly
TCC
[SRA]
>SRA1024735
SRR035084.389954
454 Sequencing (SRP001805)
249
178
-
Gly
TCC
[SRA]
>SRA1025299
SRR035084.544703
454 Sequencing (SRP001805)
428
499
+
Gly
TCC
[SRA]
>SRA1032196
SRR035087.574211
454 Sequencing (SRP001808)
40
111
+
Gly
TCC
[SRA]
>SRA1035121
SRR035089.241435
454 Sequencing (SRP001810)
237
164
-
Gly
TCC
[SRA]
>SRA1052771
SRR035098.272381
454 Sequencing (SRP001819)
208
135
-
Gly
TCC
[SRA]
>SRA1052870
SRR035098.288862
454 Sequencing (SRP001819)
360
289
-
Gly
TCC
[SRA]
>SRA1052890
SRR035098.293618
454 Sequencing (SRP001819)
476
405
-
Gly
TCC
[SRA]
>SRA1052967
SRR035098.309792
454 Sequencing (SRP001819)
176
105
-
Gly
TCC
[SRA]
>SRA1052981
SRR035098.312765
454 Sequencing (SRP001819)
306
235
-
Gly
TCC
[SRA]
>SRA1053112
SRR035098.341004
454 Sequencing (SRP001819)
289
360
+
Gly
TCC
[SRA]
>SRA1053136
SRR035098.346170
454 Sequencing (SRP001819)
226
155
-
Gly
TCC
[SRA]
>SRA1053295
SRR035098.376877
454 Sequencing (SRP001819)
298
225
-
Gly
TCC
[SRA]
>SRA1053469
SRR035098.412735
454 Sequencing (SRP001819)
298
225
-
Gly
TCC
[SRA]
>W1511317424
JPXF01000027
Actinomycetota
Cryobacterium roopkundense RuG17 [JPXF]
29424
29351
-
Gly
TCC
[ENA]
¡û
>W1511352455
JROD01000012
Actinomycetota
Clavibacter michiganensis CF11 [JROD]
69013
68940
-
Gly
TCC
[ENA]
¡û
>W1511528993
JYJA01000041
Actinomycetota
Microbacterium trichothecenolyticum DSM 8608 [JYJA]
309870
309943
+
Gly
TCC
[ENA]
¡û
>C161045393
CP012749
Actinomycetota
Rhodococcus sp. 008 [CP012749]
6376339
6376412
+
Gly
TCC
[Ensembl]
¡û
>C161095683
CP016282
Actinomycetota
Cryobacterium arcticum PAMC 27867 [CP016282]
2234142
2234215
+
Gly
TCC
[Ensembl]
¡û
>W121061243
AJGR01000119
Actinomycetota
Microbacterium laevaniformans OR221 [AJGR]
165001
164928
-
Gly
TCC
[ENA]
¡û
>WENV059114
AACY023354195
Marine microbial communities from Global Ocean Sampling (GOS)
777
850
+
Gly
TCC
[ENA]
>W1610068644
BCRM01000016
Actinomycetota
Rhodococcus erythropolis NBRC 15567 [BCRM]
39669
39596
-
Gly
TCC
[ENA]
¡û
>W1610625674
LIAY01000052
Actinomycetota
Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY]
2391
2464
+
Gly
TCC
[ENA]
¡û
>W1610729466
LMIA01000002
Actinomycetota
Nocardioides sp. Root190 [LMIA]
38197
38270
+
Gly
TCC
[ENA]
¡û
>W1610737811
LMOK01000001
Actinomycetota
Leifsonia sp. Leaf325 [LMOK]
606862
606935
+
Gly
TCC
[ENA]
¡û
>W1610738412
LMOX01000003
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
205739
205810
+
Gly
TCC
[ENA]
¡û
>W1610738532
LMPA01000002
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
626667
626738
+
Gly
TCC
[ENA]
¡û
>W1610738578
LMPB01000001
Actinomycetota
Frigoribacterium sp. Leaf172 [LMPB]
1311334
1311261
-
Gly
TCC
[ENA]
¡û
>W1610857115
LQQC01000010
Actinomycetota
Brevibacterium ravenspurgense [LQQC]
510006
509935
-
Gly
TCC
[ENA]
¡û
>W1610905887
LSBM01000332
Actinomycetota
Rhodococcus sp. SC4 [LSBM]
105790
105717
-
Gly
TCC
[ENA]
¡û
>W1610918499
LSOE01000003
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
78342
78415
+
Gly
TCC
[ENA]
¡û
>W1710066017
BCRM01000016
Actinomycetota
Rhodococcus erythropolis NBRC 15567 [BCRM]
39669
39596
-
Gly
TCC
[ENA]
¡û
>W1710071838
BCWX01000002
Actinomycetota
Rhodococcus globerulus NBRC 14531 [BCWX]
104579
104506
-
Gly
TCC
[ENA]
¡û
>W1710520665
FNFU01000011
Actinomycetota
Cryobacterium psychrotolerans [FNFU]
47645
47572
-
Gly
TCC
[ENA]
¡û
>W1710565115
FOQZ01000001
Actinomycetota
Microbacterium saccharophilum unc380mfsha3.1 [FOQZ]
944234
944161
-
Gly
TCC
[ENA]
¡û
>W1710597991
FTNQ01000001
Actinomycetota
Microbacterium sp. RURRCA19A [FTNQ]
295725
295652
-
Gly
TCC
[ENA]
¡û
>W1710604660
FVZG01000001
Actinomycetota
Clavibacter michiganensis [FVZG]
1430460
1430387
-
Gly
TCC
[ENA]
¡û
>W1710756801
LIAY01000052
Actinomycetota
Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY]
2391
2464
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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