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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412094 (76 seq.)
>W1710805233
LJZW01000003
Gammaproteobacteria
Xylella fastidiosa [LJZW]
1363
1290
-
Cys
GCA
[ENA]
¡û
>W1710808087
LKDK01000023
Gammaproteobacteria
Xylella fastidiosa subsp. pauca [LKDK]
3659
3586
-
Cys
GCA
[ENA]
¡û
>W1710809665
LKES01000109
Gammaproteobacteria
Xylella fastidiosa [LKES]
795
868
+
Cys
GCA
[ENA]
¡û
>W1711055790
LRVE01000126
Gammaproteobacteria
Xylella fastidiosa [LRVE]
39643
39716
+
Cys
GCA
[ENA]
¡û
>W1711055862
LRVG01000059
Gammaproteobacteria
Xylella fastidiosa [LRVG]
185931
186004
+
Cys
GCA
[ENA]
¡û
>W1711055905
LRVH01000084
Gammaproteobacteria
Xylella fastidiosa [LRVH]
2344
2271
-
Cys
GCA
[ENA]
¡û
>W1711055931
LRVI01000001
Gammaproteobacteria
Xylella fastidiosa [LRVI]
182133
182206
+
Cys
GCA
[ENA]
¡û
>W1711056026
LRVJ01000167
Gammaproteobacteria
Xylella fastidiosa [LRVJ]
8886
8813
-
Cys
GCA
[ENA]
¡û
>W1711077999
LSMJ01000002
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa [LSMJ]
566354
566281
-
Cys
GCA
[ENA]
¡û
>W131155984
AQPA01000063
Gammaproteobacteria
Pseudomonas thermotolerans DSM 14292 [AQPA]
9600
9527
-
Cys
GCA
[ENA]
¡û
>W1711134798
LUYA01000023
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex [LUYA]
1383
1310
-
Cys
GCA
[ENA]
¡û
>W1711134845
LUYB01000022
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex [LUYB]
561
488
-
Cys
GCA
[ENA]
¡û
>W1711134896
LUYC01000020
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex [LUYC]
30923
30996
+
Cys
GCA
[ENA]
¡û
>W1711173213
LWCR01000034
Gammaproteobacteria
Pseudomonas oryzihabitans [LWCR]
287317
287244
-
Cys
GCA
[ENA]
¡û
>W131221308
AUAJ01000003
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex ATCC 35871 [AUAJ]
247446
247519
+
Cys
GCA
[ENA]
¡û
>W1711484690
MKCZ01000018
Gammaproteobacteria
Stenotrophomonas sp. BIIR7 [MKCZ]
4
77
+
Cys
GCA
[ENA]
¡û
>W1711618112
MPAZ01000045
Gammaproteobacteria
Xylella fastidiosa [MPAZ]
30875
30948
+
Cys
GCA
[ENA]
¡û
>C171002847
CP010051
Gammaproteobacteria
Xylella fastidiosa Fb7 [CP010051]
840968
840895
-
Cys
GCA
-
¡û
>C171113975
CP020870
Gammaproteobacteria
Xylella fastidiosa subsp. pauca De Donno [CP020870]
947050
946977
-
Cys
GCA
-
¡û
>C027155
AE003849
Gammaproteobacteria
Xylella fastidiosa 9a5c [AE003849]
2004768
2004841
+
Cys
GCA
[Ensembl]
¡û
>C027222
AE009442
Gammaproteobacteria
Xylella fastidiosa Temecula1 [AE009442]
953053
952980
-
Cys
GCA
[Ensembl]
¡û
>w001680
AAAM03000035
Gammaproteobacteria
Xylella fastidiosa Ann-1 [AAAM]
36337
36412
+
Cys
GCA
[ENA]
¡û
>w001637
AAAM03000003
Gammaproteobacteria
Xylella fastidiosa Ann-1 [AAAM]
129280
129355
+
Cys
GCA
[ENA]
¡û
>w001631
AAAL02000017
Gammaproteobacteria
Xylella fastidiosa Dixon [AAAL]
31455
31530
+
Cys
GCA
[ENA]
¡û
>W141097016
AVGA01000028
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex Griffin-1 [AVGA]
479
406
-
Cys
GCA
[ENA]
¡û
>W141148592
AWYH01000018
Gammaproteobacteria
Xylella fastidiosa 32 [AWYH]
109523
109450
-
Cys
GCA
[ENA]
¡û
>W141152285
AXBS01000020
Gammaproteobacteria
Xylella fastidiosa 6c [AXBS]
8814
8741
-
Cys
GCA
[ENA]
¡û
>W141153675
AXDP01000015
Gammaproteobacteria
Xylella fastidiosa Mul-MD [AXDP]
36479
36406
-
Cys
GCA
[ENA]
¡û
>WENV181731735
OGQD01002787
[OGQD] human gut metagenome; faeces
7940
7867
-
Cys
GCA
[ENA]
¢þ
>C08011567
CP000941
Gammaproteobacteria
Xylella fastidiosa M12 [CP000941]
992370
992300
-
Cys
GCA
[Ensembl]
¡û
>C08011616
CP001011
Gammaproteobacteria
Xylella fastidiosa M23 [CP001011]
962572
962502
-
Cys
GCA
[Ensembl]
¡û
>WENV170822790
MDSY01046421
[MDSY] marine metagenome; seawater
1217
1144
-
Cys
GCA
[ENA]
¢þ
>WENV170838135
MDSZ01162313
[MDSZ] marine metagenome; seawater
1394
1321
-
Cys
GCA
[ENA]
¢þ
>C181007948
CP009790
Gammaproteobacteria
Xylella fastidiosa U24D [CP009790]
2004744
2004817
+
Cys
GCA
-
¡û
>C181008015
CP009823
Gammaproteobacteria
Xylella fastidiosa J1a12 [CP009823]
2000081
2000008
-
Cys
GCA
-
¡û
>C181008068
CP009826
Gammaproteobacteria
Xylella fastidiosa Pr8x [CP009826]
1009187
1009114
-
Cys
GCA
-
¡û
>C181008116
CP009829
Gammaproteobacteria
Xylella fastidiosa 3124 [CP009829]
1001498
1001425
-
Cys
GCA
-
¡û
>C181008166
CP009885
Gammaproteobacteria
Xylella fastidiosa Hib4 [CP009885]
1054996
1054923
-
Cys
GCA
-
¡û
>C181020223
CP016608
Gammaproteobacteria
Xylella fastidiosa Salento-1 [CP016608]
946943
946870
-
Cys
GCA
-
¡û
>C181020272
CP016610
Gammaproteobacteria
Xylella fastidiosa Salento-2 [CP016610]
947016
946943
-
Cys
GCA
-
¡û
>W141699128
JMHP01000019
Gammaproteobacteria
Xylella fastidiosa [JMHP]
1109
1036
-
Cys
GCA
[ENA]
¡û
>W1911582021
PHFP01000023
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP8071 [PHFP]
15729
15802
+
Cys
GCA
[ENA]
¡û
>W1911582067
PHFQ01000013
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP7969 [PHFQ]
64788
64861
+
Cys
GCA
[ENA]
¡û
>W1911582115
PHFR01000015
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP7970 [PHFR]
5536
5463
-
Cys
GCA
[ENA]
¡û
>W1911582167
PHFS01000036
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex CFBP8078 [PHFS]
573
500
-
Cys
GCA
[ENA]
¡û
>W1911582219
PHFT01000026
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP8082 [PHFT]
5536
5463
-
Cys
GCA
[ENA]
¡û
>W1911582254
PHFU01000014
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP8351 [PHFU]
5528
5455
-
Cys
GCA
[ENA]
¡û
>W1911582306
PHFV01000025
Gammaproteobacteria
Xylella fastidiosa subsp. sandyi CFBP8356 [PHFV]
24222
24295
+
Cys
GCA
[ENA]
¡û
>W1911710175
QPQV01000112
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex ESVL [QPQV]
30906
30979
+
Cys
GCA
[ENA]
¡û
>W1911710225
QPQW01000122
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex IVIA5901 [QPQW]
30906
30979
+
Cys
GCA
[ENA]
¡û
>W1911726726
QTJS01000054
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa XYL2055 [QTJS]
5444
5371
-
Cys
GCA
[ENA]
¡û
>W1911726762
QTJT01000027
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa XYL1732 [QTJT]
24546
24619
+
Cys
GCA
[ENA]
¡û
>W1911752126
QWLC01000087
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa IVIA5235 [QWLC]
6307
6234
-
Cys
GCA
[ENA]
¡û
>W1810195331
PKQQ01000003
Gammaproteobacteria
Stenotrophomonas sp. VV52 [PKQQ]
429237
429164
-
Cys
GCA
[ENA]
¡û
>C151011004
CP006696
Gammaproteobacteria
Xylella fastidiosa subsp. sandyi Ann-1 [CP006696]
2042863
2042936
+
Cys
GCA
[Ensembl]
¡û
>C151011709
CP006740
Gammaproteobacteria
Xylella fastidiosa MUL0034 [CP006740]
794549
794476
-
Cys
GCA
[Ensembl]
¡û
>W1511320737
JQAP01000004
Gammaproteobacteria
Xylella fastidiosa ATCC 35879 [JQAP]
335267
335194
-
Cys
GCA
[ENA]
¡û
>C11123974
CP002165
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa GB514 [CP002165]
2072880
2072807
-
Cys
GCA
[Ensembl]
¡û
>W1511436662
JUJW01000007
Gammaproteobacteria
Xylella fastidiosa CoDiRO [JUJW]
183429
183502
+
Cys
GCA
[ENA]
¡û
>W11158542
AFDJ01000006
Gammaproteobacteria
Xylella fastidiosa EB92.1 [AFDJ]
672
745
+
Cys
GCA
[ENA]
¡û
>W1610521527
JNBT01000024
Gammaproteobacteria
Xylella fastidiosa subsp. pauca 11399 [JNBT]
41656
41729
+
Cys
GCA
[ENA]
¡û
>W1610592692
LDSY01000025
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSY]
282125
282052
-
Cys
GCA
[ENA]
¡û
>W1610669090
LJZW01000003
Gammaproteobacteria
Xylella fastidiosa [LJZW]
1363
1290
-
Cys
GCA
[ENA]
¡û
>W1610672191
LKDK01000023
Gammaproteobacteria
Xylella fastidiosa subsp. pauca [LKDK]
3659
3586
-
Cys
GCA
[ENA]
¡û
>W1610673771
LKES01000109
Gammaproteobacteria
Xylella fastidiosa [LKES]
795
868
+
Cys
GCA
[ENA]
¡û
>W1610896836
LRVE01000126
Gammaproteobacteria
Xylella fastidiosa [LRVE]
39643
39716
+
Cys
GCA
[ENA]
¡û
>W1610896908
LRVG01000059
Gammaproteobacteria
Xylella fastidiosa [LRVG]
185931
186004
+
Cys
GCA
[ENA]
¡û
>W1610896951
LRVH01000084
Gammaproteobacteria
Xylella fastidiosa [LRVH]
2344
2271
-
Cys
GCA
[ENA]
¡û
>W1610896977
LRVI01000001
Gammaproteobacteria
Xylella fastidiosa [LRVI]
182133
182206
+
Cys
GCA
[ENA]
¡û
>W1610897072
LRVJ01000167
Gammaproteobacteria
Xylella fastidiosa [LRVJ]
8886
8813
-
Cys
GCA
[ENA]
¡û
>W1610917015
LSMJ01000002
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa [LSMJ]
566354
566281
-
Cys
GCA
[ENA]
¡û
>W1610981818
LWCR01000034
Gammaproteobacteria
Pseudomonas oryzihabitans [LWCR]
287317
287244
-
Cys
GCA
[ENA]
¡û
>W1710569150
FOUD01000023
Gammaproteobacteria
Halopseudomonas pachastrellae [FOUD]
1192
1119
-
Cys
GCA
[ENA]
¡û
>W1710585682
FQWN01000014
Gammaproteobacteria
Xylella fastidiosa [FQWN]
6137
6064
-
Cys
GCA
[ENA]
¡û
>W1710620812
JNBT01000024
Gammaproteobacteria
Xylella fastidiosa subsp. pauca 11399 [JNBT]
41656
41729
+
Cys
GCA
[ENA]
¡û
>W1710711972
LDSY01000025
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSY]
282125
282052
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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