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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412135 (18 seq.)
>w019734
AAUK01000008
Thermotogota
Fervidobacterium nodosum Rt17-B1 [AAUK]
14111
14186
+
Gln
CTG
[ENA]
¡û
>WENV180013876
FPIC01006596
[FPIC] soil metagenome; Soil
58239
58166
-
Gln
CTG
[ENA]
¢þ
>WENV180014667
FQKF010087192
[FQKF] soil metagenome; Soil
14307
14380
+
Gln
CTG
[ENA]
¢þ
>WENV180095508
MTBK01072065
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
699
772
+
Gln
CTG
[ENA]
¢þ
>WENV181226188
OFDK01000187
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
357
430
+
Gln
CTG
[ENA]
¢þ
>WENV181285348
OFGS01000014
[OFGS] hot springs metagenome; Water and soil
31916
31989
+
Gln
CTG
[ENA]
¢þ
>C08004991
CP000771
Thermotogota
Fervidobacterium nodosum Rt17-B1 [CP000771]
1577860
1577790
-
Gln
CTG
[Ensembl]
¡û
>C09110451
CP001185
Thermotogota
Thermosipho africanus TCF52B [CP001185]
531840
531913
+
Gln
CTG
[Ensembl]
¡û
>W1910573543
JPMG01000004
Thermotogota
Fervidobacterium sp. SC_NGM5_O18 [JPMG]
24699
24626
-
Gln
CTG
[ENA]
¡û
>W1910573570
JPMH01000010
Thermotogota
Fervidobacterium sp. SC_NGM5_G05 [JPMH]
7357
7430
+
Gln
CTG
[ENA]
¡û
>W1511355441
JRRD02000001
Thermotogota
Fervidobacterium islandicum AW-1 [JRRD]
2225354
2225427
+
Gln
CTG
[ENA]
¡û
>W1511355455
JRRD02000001
Thermotogota
Fervidobacterium islandicum AW-1 [JRRD]
1327818
1327745
-
Gln
CTG
[ENA]
¡û
>C121009898
CP003260
Thermotogota
Fervidobacterium pennivorans DSM 9078 [CP003260]
1944305
1944378
+
Gln
CTG
[Ensembl]
¡û
>C161034970
CP011393
Thermotogota
Fervidobacterium pennivorans DYC [CP011393]
1403639
1403712
+
Gln
CTG
[Ensembl]
¡û
>C161071287
CP014334
Thermotogota
Fervidobacterium islandicum AW-1 [CP014334]
1983809
1983882
+
Gln
CTG
[Ensembl]
¡û
>W121010814
AGJO01000001
Thermotogota
Fervidobacterium pennivorans DSM 9078 [AGJO]
237306
237233
-
Gln
CTG
[ENA]
¡û
>W1710517591
FNDL01000006
Thermotogota
Fervidobacterium changbaicum [FNDL]
58542
58469
-
Gln
CTG
[ENA]
¡û
>W1710593361
FRDJ01000010
Thermotogota
Fervidobacterium gondwanense DSM 13020 [FRDJ]
15306
15379
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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