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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412187 (43 seq.)
>W1710877154
LMPW01000002
Bacteroidota
Flavobacterium sp. Leaf359 [LMPW]
152704
152777
+
Cys
GCA
[ENA]
¡û
>W1711139014
LVEP01000017
Bacteroidota
Flavobacterium crassostreae LPB0076 [LVEP]
30339
30412
+
Cys
GCA
[ENA]
¡û
>W131225426
AUDO01000009
Bacteroidota
Flavobacterium frigidarium DSM 17623 [AUDO]
249538
249611
+
Pseudo
GCA
[ENA]
¡û
>W1711505185
MKVG01000012
Bacteroidota
Flavobacterium sp. 38-13 [MKVG]
138215
138288
+
Cys
GCA
[ENA]
¡û
>C171066001
CP017688
Bacteroidota
Flavobacterium crassostreae LPB0076 [CP017688]
761512
761585
+
Cys
GCA
-
¡û
>WENV180115971
OAPT01083559
[OAPT] marine metagenome; seawater
245
318
+
Cys
GCA
[ENA]
¢þ
>W141023464
AJXL01000035
Bacteroidota
Flavobacterium sp. ACAM 123 [AJXL]
30968
31041
+
Pseudo
GCA
[ENA]
¡û
>WENV180391143
OBPM01018947
[OBPM] marine metagenome; ENVO:00002010
370
441
+
Cys
GCA
[ENA]
¢þ
>WENV180594061
OCOY01023230
[OCOY] marine metagenome; ENVO:00002010
380
451
+
Cys
GCA
[ENA]
¢þ
>WENV181731911
OGQD01005829
[OGQD] human gut metagenome; faeces
77
4
-
Cys
GCA
[ENA]
¢þ
>WENV182543269
OJBA01010332
[OJBA] seawater metagenome; Sea water
744
817
+
Cys
GCA
[ENA]
¢þ
>WENV182589122
OJHY01035934
[OJHY] seawater metagenome; Sea water
87
14
-
Cys
GCA
[ENA]
¢þ
>WENV183055823
OLHH01000941
[OLHH] seawater metagenome; Sea water
2463
2390
-
Cys
GCA
[ENA]
¢þ
>WENV183058525
OLHR01000623
[OLHR] seawater metagenome; Sea water
3266
3193
-
Cys
GCA
[ENA]
¢þ
>WENV183793209
PQDT01046063
[PQDT] marine sediment metagenome; marine sediment
120
191
+
Cys
GCA
[ENA]
¢þ
>WENV170304220
CESI01027677
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
696
623
-
Cys
GCA
[ENA]
¢þ
>WENV170304313
CESI01034494
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1213
1286
+
Cys
GCA
[ENA]
¢þ
>WENV170311604
CESM01162365
[CESM] marine metagenome genome assembly TARA_102_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
413
486
+
Cys
GCA
[ENA]
¢þ
>WENV170570913
FLOH01000037
[FLOH] marine metagenome; water
377568
377495
-
Cys
GCA
[ENA]
¢þ
>WENV170604063
FUWD010358622
[FUWD] metagenome; unknown
542
615
+
Cys
GCA
[ENA]
¢þ
>WENV170620435
FUWD013031723
[FUWD] metagenome; unknown
3590
3663
+
Cys
GCA
[ENA]
¢þ
>WENV170628578
FUWD013249221
[FUWD] metagenome; unknown
3590
3663
+
Cys
GCA
[ENA]
¢þ
>C181047465
CP020919
Bacteroidota
Flavobacterium kingsejongi WV39 [CP020919]
1109497
1109568
+
Cys
GCA
-
¡û
>C181168482
CP028811
Bacteroidota
Flavobacterium magnum HYN0048 [CP028811]
917797
917868
+
Cys
GCA
-
¡û
>C181175926
CP029187
Bacteroidota
Flavobacterium pallidum HYN0049 [CP029187]
932271
932342
+
Cys
GCA
-
¡û
>W1911139449
NOXX01000218
Bacteroidota
Flavobacterium aurantiibacter TH167 [NOXX]
5178
5107
-
Cys
GCA
[ENA]
¡û
>W1810156542
PJBJ01000030
Bacteroidota
Flavobacterium sp. ALD4 [PJBJ]
895410
895339
-
Cys
GCA
[ENA]
¡û
>W1810173567
PJND01000007
Bacteroidota
Flavobacterium lindanitolerans IP-10 [PJND]
583488
583415
-
Cys
GCA
[ENA]
¡û
>W1810365422
PVUB01000002
Bacteroidota
Flavobacterium granuli DSM 17797 [PVUB]
261831
261902
+
Cys
GCA
[ENA]
¡û
>W1810861100
QTTQ01000009
Bacteroidota
Lutibacter oceani 325-5 [QTTQ]
1087792
1087863
+
Cys
GCA
[ENA]
¡û
>SRA1004324
SRR002328.276793
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
24
97
+
Cys
GCA
[SRA]
>W1511576821
LAQA01000007
Bacteroidota
Flavobacteriaceae bacterium ASP10-09a [LAQA]
18603
18676
+
Cys
GCA
[ENA]
¡û
>C161055961
CP013355
Bacteroidota
Lutibacter profundi LP1 [CP013355]
1874967
1874894
-
Cys
GCA
[Ensembl]
¡û
>W121034186
AHKF01000010
Bacteroidota
Flavobacterium frigoris PS1 [AHKF]
159322
159395
+
Cys
GCA
[ENA]
¡û
>W1610739500
LMPW01000002
Bacteroidota
Flavobacterium sp. Leaf359 [LMPW]
152704
152777
+
Cys
GCA
[ENA]
¡û
>W1610950022
LVEP01000017
Bacteroidota
Flavobacterium crassostreae LPB0076 [LVEP]
30339
30412
+
Cys
GCA
[ENA]
¡û
>W1710507376
FMVF01000013
Bacteroidota
Flavobacterium caeni [FMVF]
44869
44798
-
Cys
GCA
[ENA]
¡û
>W1710519747
FNEZ01000001
Bacteroidota
Flavobacterium noncentrifugens [FNEZ]
799265
799336
+
Pseudo
GCA
[ENA]
¡û
>W1710528010
FNMV01000001
Bacteroidota
Flavobacterium degerlachei [FNMV]
290815
290888
+
Pseudo
GCA
[ENA]
¡û
>W1710533467
FNRD01000002
Bacteroidota
Flavobacterium gillisiae [FNRD]
320886
320959
+
Pseudo
GCA
[ENA]
¡û
>W1710551308
FOFZ01000001
Bacteroidota
Flavobacterium frigoris [FOFZ]
249671
249744
+
Pseudo
GCA
[ENA]
¡û
>W1710575920
FOZP01000002
Bacteroidota
Lutibacter maritimus [FOZP]
136862
136935
+
Cys
GCA
[ENA]
¡û
>W1710585706
FQWO01000002
Bacteroidota
Flavobacterium granuli [FQWO]
261831
261904
+
Pseudo
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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