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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412198 (111 seq.)
>W1710786656
LJJB01000010
Bacillota
Brevibacillus choshinensis [LJJB]
1830917
1830990
+
Trp
CCA
[ENA]
¡û
>W1710876782
LMPN01000031
Bacillota
Brevibacillus sp. Leaf182 [LMPN]
649
576
-
Trp
CCA
[ENA]
¡û
>W1710876786
LMPN01000033
Bacillota
Brevibacillus sp. Leaf182 [LMPN]
615106
615033
-
Trp
CCA
[ENA]
¡û
>W1710879552
LMRU01000004
Bacillota
Bacillus sp. Leaf406 [LMRU]
1124
1051
-
Trp
CCA
[ENA]
¡û
>W1710879654
LMRV01000028
Bacillota
Paenibacillus sp. Soil522 [LMRV]
119757
119684
-
Trp
CCA
[ENA]
¡û
>W1710879655
LMRV01000028
Bacillota
Paenibacillus sp. Soil522 [LMRV]
119645
119572
-
Trp
CCA
[ENA]
¡û
>W1710879683
LMRV01000042
Bacillota
Paenibacillus sp. Soil522 [LMRV]
1163
1236
+
Trp
CCA
[ENA]
¡û
>W1710882762
LMVC01000002
Bacillota
Fictibacillus sp. FJAT-27399 [LMVC]
1794295
1794222
-
Trp
CCA
[ENA]
¡û
>W1710909214
LNQI01000007
Bacillota
[Bacillus] enclensis [LNQI]
3411
3338
-
Trp
CCA
[ENA]
¡û
>W1710909250
LNQI01000022
Bacillota
[Bacillus] enclensis [LNQI]
180
253
+
Trp
CCA
[ENA]
¡û
>W1711009915
LQQY01000007
Bacillota
Rossellomorea marisflavi [LQQY]
47680
47753
+
Trp
CCA
[ENA]
¡û
>W131086506
AOBR01000187
Bacillota
Brevibacillus agri BAB-2500 [AOBR]
2524
2451
-
Trp
CCA
[ENA]
¡û
>W131086514
AOBR01000262
Bacillota
Brevibacillus agri BAB-2500 [AOBR]
306
379
+
Trp
CCA
[ENA]
¡û
>W1711066685
LSDB01000032
Bacillota
Gemella asaccharolytica [LSDB]
1986
1914
-
Trp
CCA
[ENA]
¡û
>W1711208543
LXGJ01000240
Bacillota
Brevibacillus sp. WF146 [LXGJ]
765
838
+
Trp
CCA
[ENA]
¡û
>W1711434754
MINN01000077
Bacillota
Rossellomorea aquimaris [MINN]
1576
1649
+
Trp
CCA
[ENA]
¡û
>W1711434789
MINN01000117
Bacillota
Rossellomorea aquimaris [MINN]
243439
243366
-
Trp
CCA
[ENA]
¡û
>W1711657812
MQMF01000002
Bacillota
Fictibacillus arsenicus [MQMF]
1313477
1313404
-
Trp
CCA
[ENA]
¡û
>W1711799980
MXAR01000006
Bacillota
Brevibacillus brevis [MXAR]
3452
3525
+
Trp
CCA
[ENA]
¡û
>W1711800082
MXAR01000066
Bacillota
Brevibacillus brevis [MXAR]
574
647
+
Trp
CCA
[ENA]
¡û
>W141026755
AKYF01000014
Bacillota
Brevibacillus brevis X23 [AKYF]
656
729
+
Trp
CCA
[ENA]
¡û
>WENV180712699
ODFT01025854
[ODFT] human metagenome; G_DNA_Posterior fornix
231
159
-
Trp
CCA
[ENA]
¢þ
>W141080223
ATMS01000031
Bacillota
Paenibacillus alvei A6-6i-x [ATMS]
70363
70290
-
Trp
CCA
[ENA]
¡û
>W141080358
ATNE01000001
Bacillota
Brevibacillus thermoruber 423 [ATNE]
782931
782858
-
Trp
CCA
[ENA]
¡û
>W141080381
ATNE01000006
Bacillota
Brevibacillus thermoruber 423 [ATNE]
304
377
+
Trp
CCA
[ENA]
¡û
>W141234244
BAWL01000020
Bacillota
Bacillus sp. TS-2 [BAWL]
85952
85879
-
Trp
CCA
[ENA]
¡û
>W141251608
CBQR020000167
Bacillota
Gorillibacterium massiliense G5 [CBQR]
957
1030
+
Trp
CCA
[ENA]
¡û
>W141266374
CCMN01000031
Bacillota
Rossellomorea aquimaris [CCMN]
96903
96830
-
Trp
CCA
[ENA]
¡û
>W141266406
CCMN01000050
Bacillota
Rossellomorea aquimaris [CCMN]
12768
12695
-
Trp
CCA
[ENA]
¡û
>W141288889
JAQG01000120
Bacillota
Brevibacillus borstelensis Jul-96 [JAQG]
660
587
-
Trp
CCA
[ENA]
¡û
>W141288912
JAQG01000172
Bacillota
Brevibacillus borstelensis Jul-96 [JAQG]
785
858
+
Trp
CCA
[ENA]
¡û
>W141291569
JATL01000054
Bacillota
Brevibacillus agri 5·î2Æü [JATL]
621
548
-
Trp
CCA
[ENA]
¡û
>W141291595
JATL01000092
Bacillota
Brevibacillus agri 5·î2Æü [JATL]
3
76
+
Trp
CCA
[ENA]
¡û
>WENV183735058
PJUA01000634
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
14145
14072
-
Trp
CCA
[ENA]
¢þ
>C181081994
CP023474
Bacillota
Brevibacillus brevis X23 [CP023474]
8401
8474
+
Trp
CCA
-
¡û
>C181082050
CP023474
Bacillota
Brevibacillus brevis X23 [CP023474]
1151808
1151881
+
Trp
CCA
-
¡û
>C191041916
CP026363
Bacillota
Brevibacillus agri DSM 6348 [CP026363]
4815487
4815414
-
Trp
CCA
-
¡û
>C191041958
CP026363
Bacillota
Brevibacillus agri DSM 6348 [CP026363]
537976
537903
-
Trp
CCA
-
¡û
>C191099083
CP033051
Bacillota
Rossellomorea marisflavi Bac144 [CP033051]
2382621
2382694
+
Trp
CCA
-
¡û
>C191099108
CP033051
Bacillota
Rossellomorea marisflavi Bac144 [CP033051]
3659932
3659859
-
Trp
CCA
-
¡û
>W141819441
JQMH01000006
Bacillota
Brevibacillus thermoruber PM1 [JQMH]
1132740
1132667
-
Trp
CCA
[ENA]
¡û
>W141819475
JQMH01000016
Bacillota
Brevibacillus thermoruber PM1 [JQMH]
1502
1429
-
Trp
CCA
[ENA]
¡û
>W141819505
JQMH01000019
Bacillota
Brevibacillus thermoruber PM1 [JQMH]
843529
843456
-
Trp
CCA
[ENA]
¡û
>W1910154720
BILZ01000043
Bacillota
Paenibacillus kobensis NBRC 15729 [BILZ]
51922
51849
-
Trp
CCA
[ENA]
¡û
>W1910183535
BJNU01000141
Bacillota
Brevibacillus brevis NBRC 15304 [BJNU]
646
719
+
Trp
CCA
[ENA]
¡û
>W1910183922
BJOD01000099
Bacillota
Brevibacillus agri NBRC 15538 [BJOD]
239
312
+
Trp
CCA
[ENA]
¡û
>W1910183934
BJOD01000166
Bacillota
Brevibacillus agri NBRC 15538 [BJOD]
280
207
-
Trp
CCA
[ENA]
¡û
>W1910437641
FVYY01000001
Bacillota
Rossellomorea marisflavi Marseille-P794 [FVYY]
1003
1076
+
Trp
CCA
[ENA]
¡û
>C09101400
AP008955
Bacillota
Brevibacillus brevis NBRC 100599 [AP008955]
8863
8936
+
Trp
CCA
[Ensembl]
¡û
>C09101456
AP008955
Bacillota
Brevibacillus brevis NBRC 100599 [AP008955]
1111384
1111457
+
Trp
CCA
[Ensembl]
¡û
>W1911336342
NUOW01000065
Bacillota
Bacillus sp. AFS031507 [NUOW]
36181
36108
-
Trp
CCA
[ENA]
¡û
>W1911354413
NUYW01000029
Bacillota
Bacillus sp. AFS076308 [NUYW]
1240
1313
+
Trp
CCA
[ENA]
¡û
>W1911680885
QJKL01000001
Bacillota
Fictibacillus sp. S7 [QJKL]
2348843
2348770
-
Trp
CCA
[ENA]
¡û
>W1810001152
BEXF01000002
Bacillota
Brevibacillus reuszeri NIT02 [BEXF]
492277
492350
+
Trp
CCA
[ENA]
¡û
>W1810057704
PDIY01000001
Bacillota
Bacillus sp. es.034 [PDIY]
1288586
1288659
+
Trp
CCA
[ENA]
¡û
>W1810389885
PXXZ01000024
Bacillota
Brevibacillus brevis NRRL NRS-604 [PXXZ]
140010
139937
-
Trp
CCA
[ENA]
¡û
>W1810389936
PXXZ01000091
Bacillota
Brevibacillus brevis NRRL NRS-604 [PXXZ]
562
489
-
Trp
CCA
[ENA]
¡û
>W1810391331
PXZL01000043
Bacillota
Brevibacillus formosus NRRL NRS-863 [PXZL]
16743
16816
+
Trp
CCA
[ENA]
¡û
>W1810391342
PXZL01000048
Bacillota
Brevibacillus formosus NRRL NRS-863 [PXZL]
12084
12011
-
Trp
CCA
[ENA]
¡û
>W1810391398
PXZM01000012
Bacillota
Brevibacillus fortis NRRL NRS-1210 [PXZM]
293579
293652
+
Trp
CCA
[ENA]
¡û
>W1810391433
PXZM01000045
Bacillota
Brevibacillus fortis NRRL NRS-1210 [PXZM]
806
879
+
Trp
CCA
[ENA]
¡û
>W1810391513
PXZN01000018
Bacillota
Brevibacillus sp. NRRL NRS-603 [PXZN]
399
472
+
Trp
CCA
[ENA]
¡û
>W1810391538
PXZN01000020
Bacillota
Brevibacillus sp. NRRL NRS-603 [PXZN]
801
874
+
Trp
CCA
[ENA]
¡û
>W1810391633
PXZO01000042
Bacillota
Brevibacillus porteri NRRL B-41110 [PXZO]
228575
228648
+
Trp
CCA
[ENA]
¡û
>W1810391675
PXZO01000074
Bacillota
Brevibacillus porteri NRRL B-41110 [PXZO]
942
1015
+
Trp
CCA
[ENA]
¡û
>W1810608891
QGTQ01000024
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
101265
101192
-
Trp
CCA
[ENA]
¡û
>W1810608934
QGTQ01000047
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
27154
27081
-
Trp
CCA
[ENA]
¡û
>W1810787389
QRDR01000008
Bacillota
Brevibacillus brevis DSM 30 [QRDR]
316320
316247
-
Trp
CCA
[ENA]
¡û
>W1810787453
QRDR01000057
Bacillota
Brevibacillus brevis DSM 30 [QRDR]
798
725
-
Trp
CCA
[ENA]
¡û
>W1511500252
JXAV01000041
Bacillota
Brevibacillus borstelensis LChuR05 [JXAV]
46052
45979
-
Trp
CCA
[ENA]
¡û
>W1511500301
JXAV01000077
Bacillota
Brevibacillus borstelensis LChuR05 [JXAV]
5358
5431
+
Trp
CCA
[ENA]
¡û
>W1511523227
JYCD01000117
Bacillota
Aeribacillus pallidus GS3372 [JYCD]
7500
7427
-
Trp
CCA
[ENA]
¡û
>W1511523243
JYCD01000155
Bacillota
Aeribacillus pallidus GS3372 [JYCD]
76549
76476
-
Trp
CCA
[ENA]
¡û
>W1511629684
LDCN01000003
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
903876
903949
+
Trp
CCA
[ENA]
¡û
>W1511629704
LDCN01000003
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
906924
906997
+
Trp
CCA
[ENA]
¡û
>W1511629711
LDCN01000004
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
477
550
+
Trp
CCA
[ENA]
¡û
>W1511642868
LDWH01000007
Bacillota
Rossellomorea marisflavi LK16 [LDWH]
116493
116566
+
Trp
CCA
[ENA]
¡û
>W1511643021
LDWJ01000003
Bacillota
Rossellomorea marisflavi LK19 [LDWJ]
1168
1095
-
Trp
CCA
[ENA]
¡û
>W1511700117
LGJF01000001
Bacillota
Bacillus sp. FJAT-27238 [LGJF]
4646079
4646006
-
Trp
CCA
[ENA]
¡û
>W1511700171
LGJF01000001
Bacillota
Bacillus sp. FJAT-27238 [LGJF]
3588945
3588872
-
Trp
CCA
[ENA]
¡û
>W1511706401
LGUE01000008
Bacillota
Rossellomorea marisflavi JCM 11544 [LGUE]
603
530
-
Trp
CCA
[ENA]
¡û
>C161102928
CP016761
Bacillota
Fictibacillus arsenicus G25-54 [CP016761]
539861
539934
+
Trp
CCA
[Ensembl]
¡û
>W121114584
ALPT01000401
Bacillota
Alkalihalobacillus alcalophilus ATCC 27647 [ALPT]
194
267
+
Trp
CCA
[ENA]
¡û
>W1610073102
BCVQ01000120
Bacillota
Rossellomorea vietnamensis NBRC 101237 [BCVQ]
416
343
-
Trp
CCA
[ENA]
¡û
>W1610095269
CYUM01000001
Bacillota
Gorillibacterium timonense SN4 [CYUM]
2729
2656
-
Trp
CCA
[ENA]
¡û
>W1610586209
LDFV01000004
Bacillota
Fictibacillus arsenicus G25-54 [LDFV]
3081
3154
+
Trp
CCA
[ENA]
¡û
>W1610594737
LDYF01000011
Bacillota
Bacillus coahuilensis m2-6 [LDYF]
1515
1588
+
Trp
CCA
[ENA]
¡û
>W1610638655
LIXZ01000008
Bacillota
Rossellomorea vietnamensis [LIXZ]
920
847
-
Trp
CCA
[ENA]
¡û
>W1610650511
LJJB01000010
Bacillota
Brevibacillus choshinensis [LJJB]
1830917
1830990
+
Trp
CCA
[ENA]
¡û
>W1610739128
LMPN01000031
Bacillota
Brevibacillus sp. Leaf182 [LMPN]
649
576
-
Trp
CCA
[ENA]
¡û
>W1610739132
LMPN01000033
Bacillota
Brevibacillus sp. Leaf182 [LMPN]
615106
615033
-
Trp
CCA
[ENA]
¡û
>W1610741898
LMRU01000004
Bacillota
Bacillus sp. Leaf406 [LMRU]
1124
1051
-
Trp
CCA
[ENA]
¡û
>W1610742000
LMRV01000028
Bacillota
Paenibacillus sp. Soil522 [LMRV]
119757
119684
-
Trp
CCA
[ENA]
¡û
>W1610742001
LMRV01000028
Bacillota
Paenibacillus sp. Soil522 [LMRV]
119645
119572
-
Trp
CCA
[ENA]
¡û
>W1610742029
LMRV01000042
Bacillota
Paenibacillus sp. Soil522 [LMRV]
1163
1236
+
Trp
CCA
[ENA]
¡û
>W1610744688
LMVC01000002
Bacillota
Fictibacillus sp. FJAT-27399 [LMVC]
1794295
1794222
-
Trp
CCA
[ENA]
¡û
>W1610767573
LNQI01000007
Bacillota
[Bacillus] enclensis [LNQI]
3411
3338
-
Trp
CCA
[ENA]
¡û
>W1610767609
LNQI01000022
Bacillota
[Bacillus] enclensis [LNQI]
180
253
+
Trp
CCA
[ENA]
¡û
>W1610858435
LQQY01000007
Bacillota
Rossellomorea marisflavi [LQQY]
47680
47753
+
Trp
CCA
[ENA]
¡û
>W1610907255
LSDB01000032
Bacillota
Gemella asaccharolytica [LSDB]
1986
1914
-
Trp
CCA
[ENA]
¡û
>W1610996305
LXGJ01000240
Bacillota
Brevibacillus sp. WF146 [LXGJ]
765
838
+
Trp
CCA
[ENA]
¡û
>W1710070220
BCVQ01000120
Bacillota
Rossellomorea vietnamensis NBRC 101237 [BCVQ]
416
343
-
Trp
CCA
[ENA]
¡û
>W1710081116
BDFB01000010
Bacillota
Brevibacillus brevis [BDFB]
369363
369436
+
Trp
CCA
[ENA]
¡û
>W1710081182
BDFB01000022
Bacillota
Brevibacillus brevis [BDFB]
34220
34147
-
Trp
CCA
[ENA]
¡û
>W1710098064
CYUM01000001
Bacillota
Gorillibacterium timonense SN4 [CYUM]
2729
2656
-
Trp
CCA
[ENA]
¡û
>W1710523343
FNHW01000003
Bacillota
Fictibacillus solisalsi [FNHW]
1180
1253
+
Trp
CCA
[ENA]
¡û
>W1710559207
FOML01000021
Bacillota
Bacillus sp. OV194 [FOML]
1094
1167
+
Trp
CCA
[ENA]
¡û
>W1710566203
FORT01000042
Bacillota
Brevibacillus centrosporus OK042 [FORT]
629
556
-
Trp
CCA
[ENA]
¡û
>W1710607615
FXAE01000082
Bacillota
Paenibacillus barengoltzii J12 [FXAE]
1241
1314
+
Trp
CCA
[ENA]
¡û
>W1710714189
LDYF01000011
Bacillota
Bacillus coahuilensis m2-6 [LDYF]
1515
1588
+
Trp
CCA
[ENA]
¡û
>W1710774486
LIXZ01000008
Bacillota
Rossellomorea vietnamensis [LIXZ]
920
847
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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