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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412213 (44 seq.)
>W1710906974
LNOL01000008
Betaproteobacteria
Alcaligenes faecalis [LNOL]
24541
24614
+
Gly
CCC
[ENA]
¡û
>W131051787
AMXV01000053
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
48424
48497
+
Gly
CCC
[ENA]
¡û
>W1710995941
LQAS01000010
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
22255
22328
+
Gly
CCC
[ENA]
¡û
>W131223036
AUBT01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
106532
106605
+
Gly
CCC
[ENA]
¡û
>W1711710516
MSZN01000017
Betaproteobacteria
Alcaligenes faecalis [MSZN]
3455
3528
+
Gly
CCC
[ENA]
¡û
>W1711710570
MSZO01000015
Betaproteobacteria
Alcaligenes faecalis [MSZO]
3376
3449
+
Gly
CCC
[ENA]
¡û
>W1711710595
MSZP01000003
Betaproteobacteria
Alcaligenes faecalis [MSZP]
316515
316588
+
Gly
CCC
[ENA]
¡û
>W1711710651
MSZQ01000004
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
163148
163221
+
Gly
CCC
[ENA]
¡û
>W1711710685
MSZR01000001
Betaproteobacteria
Alcaligenes faecalis [MSZR]
316495
316568
+
Gly
CCC
[ENA]
¡û
>W1711711897
MTBI01000002
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
695796
695723
-
Gly
CCC
[ENA]
¡û
>C171115494
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
596084
596157
+
Gly
CCC
-
¡û
>W141104426
AVOG02000023
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
147412
147339
-
Gly
CCC
[ENA]
¡û
>W141237709
BBJQ01000003
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
94055
94128
+
Gly
CCC
[ENA]
¡û
>WENV183733510
PJTY01003186
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
467
540
+
Gly
CCC
[ENA]
¢þ
>WENV170645906
JQGF01000185
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
20256
20329
+
Gly
CCC
[ENA]
¢þ
>WENV170655139
JTFN01007389
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
2362
2435
+
Gly
CCC
[ENA]
¢þ
>WENV170655776
JTFN01072400
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
98
25
-
Gly
CCC
[ENA]
¢þ
>WENV170656289
JTFO01008958
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
937
864
-
Gly
CCC
[ENA]
¢þ
>WENV170656370
JTFO01011515
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
98
25
-
Gly
CCC
[ENA]
¢þ
>WENV170657134
JTFO01089981
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
74
1
-
Gly
CCC
[ENA]
¢þ
>WENV170657785
JTFP01019440
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
538
611
+
Gly
CCC
[ENA]
¢þ
>WENV170965757
MTEV01002027
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
3008
3081
+
Gly
CCC
[ENA]
¢þ
>WENV170965961
MTEV01010773
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
149
222
+
Gly
CCC
[ENA]
¢þ
>C181053212
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
538883
538956
+
Gly
CCC
-
¡û
>C181088571
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
299499
299572
+
Gly
CCC
-
¡û
>C191085249
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
550244
550317
+
Gly
CCC
-
¡û
>C191091149
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
3038703
3038776
+
Gly
CCC
-
¡û
>C191113938
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
1574177
1574250
+
Gly
CCC
-
¡û
>C191149635
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
2386814
2386887
+
Gly
CCC
-
¡û
>W1910927811
NIQA01000002
Betaproteobacteria
Pusillimonas sp. T2 [NIQA]
104863
104790
-
Gly
CCC
[ENA]
¡û
>W1911178545
NQMK01000001
Betaproteobacteria
Pusillimonas sp. NJUB218 [NQMK]
502174
502247
+
Gly
CCC
[ENA]
¡û
>W1810089027
PGEK01000017
Betaproteobacteria
Castellaniella caeni CD04 [PGEK]
34639
34712
+
Gly
CCC
[ENA]
¡û
>W1810583897
QEXO01000002
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
690906
690833
-
Gly
CCC
[ENA]
¡û
>W1511321029
JQCV01000004
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
726942
726869
-
Gly
CCC
[ENA]
¡û
>W1511537468
JZBR01000007
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
285251
285324
+
Gly
CCC
[ENA]
¡û
>C161051373
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
1783251
1783178
-
Gly
CCC
[Ensembl]
¡û
>W121091222
AKMR01000013
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
374894
374821
-
Gly
CCC
[ENA]
¡û
>W1610074265
BCWN01000014
Betaproteobacteria
Castellaniella caeni NBRC 101664 [BCWN]
55425
55498
+
Gly
CCC
[ENA]
¡û
>W1610093536
CYTB01000001
Betaproteobacteria
Alcaligenes faecalis ATCC8750 [CYTB]
94176
94249
+
Gly
CCC
[ENA]
¡û
>W1610765988
LNOL01000008
Betaproteobacteria
Alcaligenes faecalis [LNOL]
24541
24614
+
Gly
CCC
[ENA]
¡û
>W1610850598
LQAS01000010
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
22255
22328
+
Gly
CCC
[ENA]
¡û
>W1610921505
LSUO01000003
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
347950
347877
-
Gly
CCC
[ENA]
¡û
>W1710071383
BCWN01000014
Betaproteobacteria
Castellaniella caeni NBRC 101664 [BCWN]
55425
55498
+
Gly
CCC
[ENA]
¡û
>W1710082512
BDHG01000002
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BDHG]
94195
94268
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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