This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412217 (13 seq.)
>WENV180241836
OBDI01015551
[OBDI] metagenome; diffuse fluid
176
102
-
Gln
TTG
[ENA]
¡û
>WENV180242217
OBDI01136438
[OBDI] metagenome; diffuse fluid
137
63
-
Gln
TTG
[ENA]
¡û
>WENV180299748
OBJC01108106
[OBJC] metagenome; water
2
76
+
Gln
TTG
[ENA]
¡û
>WENV180583645
OCNB01152243
[OCNB] metagenome; diffuse fluid
271
197
-
Gln
TTG
[ENA]
¡û
>WENV180583739
OCNB01194281
[OCNB] metagenome; diffuse fluid
170
96
-
Gln
TTG
[ENA]
¡û
>WENV180634800
OCRB01112324
[OCRB] metagenome; diffuse fluid
96
170
+
Gln
TTG
[ENA]
¡û
>WENV170015126
AZIE01000214
[AZIE] marine sediment metagenome; sample MGS-MCh from oil contaminated site at the lagoon of Mar Chica, located in the north-west
3088
3162
+
Gln
TTG
[ENA]
¡û
>W1911576581
PDKE01000004
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
115380
115454
+
Gln
TTG
[ENA]
¡û
>W1911576591
PDKE01000011
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
117937
117863
-
Gln
TTG
[ENA]
¡û
>W2011185963
PDJU01000006
Campylobacterota
Arcobacter sp. F155 [PDJU]
69716
69790
+
Gln
TTG
[ENA]
¡û
>W2011185970
PDJU01000009
Campylobacterota
Arcobacter sp. F155 [PDJU]
2926
3000
+
Gln
TTG
[ENA]
¡û
>W2011186395
PDKE01000004
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
115380
115454
+
Gln
TTG
[ENA]
¡û
>W2011186405
PDKE01000011
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
117937
117863
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK