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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412268 (57 seq.)
>C171063255
CP017477
Bacteroidota
Polaribacter vadi LPB0003 [CP017477]
1170492
1170418
-
Trp
CCA
-
¡û
>w014180
AAOG01000002
Bacteroidota
Polaribacter irgensii 23-P [AAOG]
276721
276795
+
Trp
CCA
[ENA]
¡û
>WENV180101525
OAOV01001882
[OAOV] marine metagenome; ENVO:00002010
111
39
-
Trp
CCA
[ENA]
¡û
>WENV180398128
OBPZ01088983
[OBPZ] marine metagenome; ENVO:00002010
232
160
-
Trp
CCA
[ENA]
¡û
>WENV180587947
OCOO01113535
[OCOO] marine metagenome; seawater
141
213
+
Trp
CCA
[ENA]
¡û
>WENV180590405
OCOT01010838
[OCOT] marine metagenome; ENVO:00002010
540
612
+
Trp
CCA
[ENA]
¡û
>WENV181313752
OFJH01003875
[OFJH] marine metagenome; seawater
263
335
+
Trp
CCA
[ENA]
¡û
>WENV182547670
OJBT01000336
[OJBT] seawater metagenome; Sea water
545
473
-
Trp
CCA
[ENA]
¡û
>WENV182557788
OJDK01014989
[OJDK] seawater metagenome; Sea water
449
377
-
Trp
CCA
[ENA]
¡û
>WENV182558240
OJDL01020611
[OJDL] seawater metagenome; Sea water
142
70
-
Trp
CCA
[ENA]
¡û
>WENV182558662
OJDN01000209
[OJDN] seawater metagenome; Sea water
3133
3205
+
Trp
CCA
[ENA]
¡û
>WENV182560348
OJDU01000035
[OJDU] seawater metagenome; Sea water
31042
31114
+
Trp
CCA
[ENA]
¡û
>WENV182565464
OJEH01006269
[OJEH] seawater metagenome; Sea water
2753
2681
-
Trp
CCA
[ENA]
¡û
>WENV182567427
OJEO01000730
[OJEO] seawater metagenome; Sea water
9131
9059
-
Trp
CCA
[ENA]
¡û
>WENV182573697
OJFP01013505
[OJFP] seawater metagenome; Sea water
546
474
-
Trp
CCA
[ENA]
¡û
>WENV182578645
OJGP01000002
[OJGP] seawater metagenome; Sea water
57537
57465
-
Trp
CCA
[ENA]
¡û
>WENV182581507
OJGX01010658
[OJGX] seawater metagenome; Sea water
1324
1396
+
Trp
CCA
[ENA]
¡û
>WENV182585234
OJHH01004381
[OJHH] seawater metagenome; Sea water
1468
1540
+
Trp
CCA
[ENA]
¡û
>WENV182589672
OJIF01001807
[OJIF] seawater metagenome; Sea water
237
309
+
Trp
CCA
[ENA]
¡û
>WENV182590795
OJIK01000636
[OJIK] seawater metagenome; Sea water
8315
8243
-
Trp
CCA
[ENA]
¡û
>WENV182593296
OJIT01027661
[OJIT] seawater metagenome; Sea water
221
293
+
Trp
CCA
[ENA]
¡û
>WENV182594180
OJIV01001163
[OJIV] seawater metagenome; Sea water
1211
1283
+
Trp
CCA
[ENA]
¡û
>WENV183056061
OLHI01000002
[OLHI] seawater metagenome; Sea water
150174
150102
-
Trp
CCA
[ENA]
¡û
>WENV183058218
OLHN01023754
[OLHN] seawater metagenome; Sea water
70
142
+
Trp
CCA
[ENA]
¡û
>WENV183061432
OLHZ01009657
[OLHZ] seawater metagenome; Sea water
600
528
-
Trp
CCA
[ENA]
¡û
>WENV183064913
OLII01003532
[OLII] seawater metagenome; Sea water
1481
1553
+
Trp
CCA
[ENA]
¡û
>WENV183617863
OOEG01169933
[OOEG] marine metagenome; sea ice
9
81
+
Trp
CCA
[ENA]
¡û
>WENV183623216
OOFX01033921
[OOFX] marine metagenome; sea ice
549
621
+
Trp
CCA
[ENA]
¡û
>WENV183623446
OOGA01001327
[OOGA] marine metagenome; sea ice
489
417
-
Trp
CCA
[ENA]
¡û
>WENV170296429
CESE01002393
[CESE] marine metagenome genome assembly TARA_085_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
837
763
-
Trp
CCA
[ENA]
¡û
>WENV170296530
CESE01015875
[CESE] marine metagenome genome assembly TARA_085_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
818
744
-
Trp
CCA
[ENA]
¡û
>WENV170538112
CEWR01054978
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
704
630
-
Trp
CCA
[ENA]
¡û
>WENV170538910
CEWR01131919
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
695
769
+
Trp
CCA
[ENA]
¡û
>WENV170568390
FLMP01035543
[FLMP] seawater metagenome; seawater
101
27
-
Trp
CCA
[ENA]
¡û
>WENV170568771
FLMP01076397
[FLMP] seawater metagenome; seawater
74
148
+
Trp
CCA
[ENA]
¡û
>WENV170646920
JQIA01005795
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
5511
5437
-
Trp
CCA
[ENA]
¡û
>WENV170823856
MDSY01065171
[MDSY] marine metagenome; seawater
1117
1043
-
Trp
CCA
[ENA]
¡û
>WENV170948814
MEHZ011286190
[MEHZ] marine metagenome; marine surface water
876
950
+
Trp
CCA
[ENA]
¡û
>W1910785554
MQUA01000013
Bacteroidota
Polaribacter filamentus ATCC 700397 [MQUA]
1868508
1868436
-
Trp
CCA
[ENA]
¡û
>W1910796555
MSCK01000002
Bacteroidota
Polaribacter butkevichii KCTC 12100 [MSCK]
1468196
1468268
+
Trp
CCA
[ENA]
¡û
>W1810173137
PJMV01000001
Bacteroidota
Polaribacter sp. Hel1_33_96 [PJMV]
1914585
1914513
-
Trp
CCA
[ENA]
¡û
>W2010894081
MQUA01000013
Bacteroidota
Polaribacter filamentus ATCC 700397 [MQUA]
1868508
1868436
-
Trp
CCA
[ENA]
¡û
>W2010904190
MSCK01000002
Bacteroidota
Polaribacter butkevichii KCTC 12100 [MSCK]
1468196
1468268
+
Trp
CCA
[ENA]
¡û
>W2011961845
VANR01000001
Bacteroidota
Polaribacter sp. DBTF-3 [VANR]
79664
79592
-
Trp
CCA
[ENA]
¡û
>W2012107348
VORR01000005
Bacteroidota
Polaribacter sp. IC066 [VORR]
23584
23656
+
Trp
CCA
[ENA]
¡û
>W2012107387
VORS01000003
Bacteroidota
Polaribacter sp. IC073 [VORS]
78439
78367
-
Trp
CCA
[ENA]
¡û
>W2012435324
WTLD01000006
Bacteroidota
Polaribacter sp. 11A2H [WTLD]
16015
15943
-
Trp
CCA
[ENA]
¡û
>W2012435586
WTPZ01000004
Bacteroidota
Polaribacter sp. 20A6 [WTPZ]
74874
74802
-
Trp
CCA
[ENA]
¡û
>C211153644
CP061813
Bacteroidota
Polaribacter haliotis KCTC 52418 [CP061813]
3479065
3479137
+
Trp
CCA
-
¡û
>C211295963
CP071795
Bacteroidota
Polaribacter sp. G4M1 [CP071795]
3188741
3188813
+
Trp
CCA
-
¡û
>C211296937
CP071869
Bacteroidota
Polaribacter sp. SM13 [CP071869]
3695595
3695667
+
Trp
CCA
-
¡û
>C211367035
CP079195
Bacteroidota
Polaribacter sp. NJDZ03 [CP079195]
1482467
1482395
-
Trp
CCA
-
¡û
>C241114893
CP047026
Bacteroidota
Polaribacter sp. L3A8 [CP047026]
4036728
4036800
+
Trp
CCA
-
¡û
>W1511297072
JPDS01000001
Bacteroidota
Polaribacter sp. Hel1_85 [JPDS]
1335042
1334968
-
Trp
CCA
[ENA]
¡û
>W1610909738
LSFM01000022
Bacteroidota
Polaribacter vadi [LSFM]
201681
201755
+
Trp
CCA
[ENA]
¡û
>W1610977612
LVWE01000050
Bacteroidota
Polaribacter atrinae [LVWE]
199693
199767
+
Trp
CCA
[ENA]
¡û
>W1710538001
FNUE01000002
Bacteroidota
Polaribacter dokdonensis DSW-5 [FNUE]
1182384
1182310
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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