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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412384 (69 seq.)
>W131001137
AGWL01000002
Actinomycetota
Actinobaculum massiliense ACS-171-V-Col2 [AGWL]
320974
321047
+
Gly
CCC
[ENA]
¡û
>W131222608
AUBK01000005
Actinomycetota
Actinotignum schaalii DSM 15541 [AUBK]
5387
5314
-
Gly
CCC
[ENA]
¡û
>W1711312404
MASY01000026
Actinomycetota
Actinobaculum suis [MASY]
120396
120469
+
Gly
CCC
[ENA]
¡û
>W1711772090
MVGS01000077
Actinomycetota
Trueperella pyogenes [MVGS]
5576
5503
-
Gly
CCC
[ENA]
¡û
>WENV180142045
OATV01000576
[OATV] human gut metagenome; faeces
423
496
+
Gly
CCC
[ENA]
¢þ
>WENV180193467
OAZW01000683
[OAZW] human gut metagenome; faeces
18345
18272
-
Gly
CCC
[ENA]
¢þ
>WENV180312549
OBJZ01000003
[OBJZ] human gut metagenome; fecal sample
56298
56225
-
Gly
CCC
[ENA]
¢þ
>WENV180408458
OBUS01002365
[OBUS] human gut metagenome; faeces
1216
1143
-
Gly
CCC
[ENA]
¢þ
>WENV180438463
OBWS01000017
[OBWS] human gut metagenome; faeces
8993
8920
-
Gly
CCC
[ENA]
¢þ
>WENV180456311
OBXQ01001002
[OBXQ] human gut metagenome; faeces
6013
5940
-
Gly
CCC
[ENA]
¢þ
>WENV180486866
OBZN01000266
[OBZN] human gut metagenome; faeces
13268
13195
-
Gly
CCC
[ENA]
¢þ
>WENV180597884
OCPL01073114
[OCPL] human gut metagenome; ENVO:feces
221
294
+
Gly
CCC
[ENA]
¢þ
>WENV180783058
ODIQ01001193
[ODIQ] human metagenome; G_DNA_Tongue dorsum
8357
8430
+
Gly
CCC
[ENA]
¢þ
>WENV180783064
ODIQ01001233
[ODIQ] human metagenome; G_DNA_Tongue dorsum
11668
11740
+
Gly
CCC
[ENA]
¢þ
>WENV180783448
ODIQ01007031
[ODIQ] human metagenome; G_DNA_Tongue dorsum
640
567
-
Gly
CCC
[ENA]
¢þ
>WENV180820522
ODJR01010447
[ODJR] human metagenome; G_DNA_Tongue dorsum
3
76
+
Gly
CCC
[ENA]
¢þ
>WENV180830216
ODKB01000878
[ODKB] human metagenome; G_DNA_Tongue dorsum
12553
12626
+
Gly
CCC
[ENA]
¢þ
>WENV180830245
ODKB01001116
[ODKB] human metagenome; G_DNA_Tongue dorsum
6277
6350
+
Gly
CCC
[ENA]
¢þ
>WENV180897597
ODNI01043571
[ODNI] human metagenome; G_DNA_Tongue dorsum
572
500
-
Gly
CCC
[ENA]
¢þ
>WENV181027909
ODXD01114083
[ODXD] human metagenome; G_DNA_Buccal mucosa
100
172
+
Gly
CCC
[ENA]
¢þ
>WENV181073538
OEAO01000444
[OEAO] human metagenome; G_DNA_Tongue dorsum
32763
32835
+
Gly
CCC
[ENA]
¢þ
>WENV181073612
OEAO01000600
[OEAO] human metagenome; G_DNA_Tongue dorsum
2538
2611
+
Gly
CCC
[ENA]
¢þ
>WENV181074175
OEAO01004065
[OEAO] human metagenome; G_DNA_Tongue dorsum
4371
4444
+
Gly
CCC
[ENA]
¢þ
>WENV181085670
OEAX01034015
[OEAX] human metagenome; G_DNA_Tongue dorsum
429
502
+
Gly
CCC
[ENA]
¢þ
>WENV181112826
OEEL01003670
[OEEL] human metagenome; G_DNA_Tongue dorsum
1248
1175
-
Gly
CCC
[ENA]
¢þ
>WENV181112878
OEEL01004791
[OEEL] human metagenome; G_DNA_Tongue dorsum
4706
4778
+
Gly
CCC
[ENA]
¢þ
>WENV181113549
OEEL01039921
[OEEL] human metagenome; G_DNA_Tongue dorsum
260
187
-
Gly
CCC
[ENA]
¢þ
>WENV181798275
OGRV01000010
[OGRV] human gut metagenome; fecal sample 3 from infant 4
213661
213734
+
Gly
CCC
[ENA]
¢þ
>WENV181807630
OGSQ01000005
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
56298
56225
-
Gly
CCC
[ENA]
¢þ
>WENV181817367
OGTN01000005
[OGTN] human gut metagenome; fecal sample 5 from infant 4
56298
56225
-
Gly
CCC
[ENA]
¢þ
>WENV181818166
OGTS01000011
[OGTS] human gut metagenome; fecal sample 4 from infant 4
213661
213734
+
Gly
CCC
[ENA]
¢þ
>WENV181818788
OGTU01000005
[OGTU] human gut metagenome; fecal sample 6 from infant 4
55159
55086
-
Gly
CCC
[ENA]
¢þ
>WENV182406686
OIFA01000064
[OIFA] human gut metagenome; stool
8890
8817
-
Gly
CCC
[ENA]
¢þ
>WENV182413310
OIFX01000366
[OIFX] human gut metagenome; stool
13387
13460
+
Gly
CCC
[ENA]
¢þ
>WENV182798957
OJTP01000037
[OJTP] human gut metagenome; human gut
20086
20159
+
Gly
CCC
[ENA]
¢þ
>WENV182813718
OJYG01000001
[OJYG] human gut metagenome; human gut
144331
144258
-
Gly
CCC
[ENA]
¢þ
>WENV182815056
OJYO01000622
[OJYO] human gut metagenome; human gut
2253
2180
-
Gly
CCC
[ENA]
¢þ
>WENV182815260
OJYQ01000012
[OJYQ] human gut metagenome; human gut
101
28
-
Gly
CCC
[ENA]
¢þ
>WENV182820481
OKAN01000080
[OKAN] human gut metagenome; human gut
1268
1341
+
Gly
CCC
[ENA]
¢þ
>WENV182830849
OKEB01000032
[OKEB] human gut metagenome; human gut
20949
21022
+
Gly
CCC
[ENA]
¢þ
>WENV182842696
OKIF01001192
[OKIF] human gut metagenome; human gut
101
28
-
Gly
CCC
[ENA]
¢þ
>WENV182843405
OKIM01000075
[OKIM] human gut metagenome; human gut
28126
28199
+
Gly
CCC
[ENA]
¢þ
>WENV182853847
OKMN01000155
[OKMN] human gut metagenome; human gut
988
915
-
Gly
CCC
[ENA]
¢þ
>WENV182858201
OKOC01000192
[OKOC] human gut metagenome; human gut
3787
3714
-
Gly
CCC
[ENA]
¢þ
>WENV182859060
OKOL01000010
[OKOL] human gut metagenome; human gut
275
348
+
Gly
CCC
[ENA]
¢þ
>WENV182943995
OKVI01002102
[OKVI] human gut metagenome; human gut
460
387
-
Gly
CCC
[ENA]
¢þ
>WENV183511740
OMJG01002842
[OMJG] food metagenome; Cotija cheese
548
477
-
Gly
CCC
[ENA]
¢þ
>WENV183707388
PDWI01008199
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2774
2847
+
Gly
CCC
[ENA]
¢þ
>C181171271
CP029001
Actinomycetota
Trueperella pyogenes TP4479 [CP029001]
747415
747487
+
Gly
CCC
-
¡û
>C181171498
CP029004
Actinomycetota
Trueperella pyogenes TP-2849 [CP029004]
1168163
1168235
+
Gly
CCC
-
¡û
>C181212678
LS483427
Actinomycetota
Arcanobacterium haemolyticum NCTC8452 [LS483427]
1601135
1601208
+
Gly
CCC
-
¡û
>C191114755
CP033903
Actinomycetota
Trueperella pyogenes TP2 [CP033903]
1110889
1110817
-
Gly
CCC
-
¡û
>C191114840
CP033905
Actinomycetota
Trueperella pyogenes TP4 [CP033905]
1773537
1773464
-
Gly
CCC
-
¡û
>W09127312
ACKW01000052
Actinomycetota
Mobiluncus mulieris ATCC 35243 [ACKW]
78345
78418
+
Gly
CCC
[ENA]
¡û
>W1910236968
FPJH01000003
Actinomycetota
Arcanobacterium urinimassiliense Marseille-P3248 [FPJH]
34571
34644
+
Gly
CCC
[ENA]
¡û
>W1810484085
QASM01000003
Actinomycetota
Trueperella pyogenes SH01 [QASM]
83771
83843
+
Gly
CCC
[ENA]
¡û
>W10110088
ADBR01000001
Actinomycetota
Mobiluncus mulieris 1·î28Æü [ADBR]
78346
78419
+
Gly
CCC
[ENA]
¡û
>W10127255
AEEE01000014
Actinomycetota
Mobiluncus curtisii subsp. curtisii ATCC 35241 [AEEE]
354806
354877
+
Gly
CCC
[ENA]
¡û
>W10127835
AEET01000009
Actinomycetota
Mobiluncus mulieris ATCC 35239 [AEET]
78341
78414
+
Gly
CCC
[ENA]
¡û
>W11112525
ADBR01000001
Actinomycetota
Mobiluncus mulieris 1·î28Æü [ADBR]
78346
78419
+
Gly
CCC
[ENA]
¡û
>W1511475027
JWCP01000368
Actinomycetota
Trueperella pyogenes 1117_TPYO [JWCP]
34111
34184
+
Gly
CCC
[ENA]
¡û
>W11134743
AEEE01000014
Actinomycetota
Mobiluncus curtisii subsp. curtisii ATCC 35241 [AEEE]
354806
354877
+
Gly
CCC
[ENA]
¡û
>W11135323
AEET01000009
Actinomycetota
Mobiluncus mulieris ATCC 35239 [AEET]
78341
78414
+
Gly
CCC
[ENA]
¡û
>W11137176
AEGV01000018
Actinomycetota
Mobiluncus mulieris FB024-16 [AEGV]
78347
78420
+
Gly
CCC
[ENA]
¡û
>W11143499
AEPY01000001
Actinomycetota
Mobiluncus curtisii ATCC 51333 [AEPY]
112500
112429
-
Gly
CCC
[ENA]
¡û
>W1511687571
LFUS01000031
Actinomycetota
Actinobaculum suis U311 [LFUS]
44029
44102
+
Gly
CCC
[ENA]
¡û
>W1610095257
CYUL01000005
Actinomycetota
Actinobaculum massiliense [CYUL]
338225
338152
-
Gly
CCC
[ENA]
¡û
>W1611057457
MASY01000026
Actinomycetota
Actinobaculum suis [MASY]
120396
120469
+
Gly
CCC
[ENA]
¡û
>W1710098052
CYUL01000005
Actinomycetota
Actinobaculum massiliense [CYUL]
338225
338152
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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