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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412448 (36 seq.)
>W1710931148
LOHE01000042
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
6093
6166
+
Gly
TCC
[ENA]
¡û
>W1710931165
LOHE01000043
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
205
278
+
Gly
TCC
[ENA]
¡û
>W1710931175
LOHE01000044
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
21147
21074
-
Gly
TCC
[ENA]
¡û
>C173001547
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
2651268
2651341
+
Gly
TCC
-
¡û
>WENV180346613
OBLN01184434
[OBLN] sediment metagenome; sediment
245
318
+
Gly
CCC
[ENA]
¢þ
>WENV183515449
OMKS01064469
[OMKS] sediment metagenome; hot spring sediment
1182
1255
+
Gly
TCC
[ENA]
¢þ
>WENV183707164
PDWI01007151
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
13413
13340
-
Gly
TCC
[ENA]
¢þ
>WENV183709074
PDWI01023483
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
26
99
+
Gly
TCC
[ENA]
¢þ
>WENV170562221
CZCB01001440
[CZCB] anaerobic digester metagenome; anaerobic digester
77902
77829
-
Gly
TCC
[ENA]
¢þ
>WENV170692717
LGOV01024455
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
27
100
+
Gly
TCC
[ENA]
¢þ
>WENV170697557
LGVF01154848
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
420
493
+
Gly
TCC
[ENA]
¢þ
>WENV170967759
MTKW01003253
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
243
316
+
Gly
TCC
[ENA]
¢þ
>WENV170968650
MTKW01012602
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3500
3573
+
Gly
TCC
[ENA]
¢þ
>WENV170968656
MTKW01012602
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
4028
4101
+
Gly
TCC
[ENA]
¢þ
>C193001125
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
3776334
3776407
+
Gly
TCC
-
¡û
>C193003658
LR215983
Bacillota
Eubacterium limosum [LR215983]
267318
267391
+
Gly
TCC
-
¡û
>W09107639
ABKR01000003
Bacillota
Natranaerobius thermophilus JW/NM-WN-LF [ABKR]
127494
127567
+
Gly
TCC
[ENA]
¡û
>W1830012241
QGUD01000001
Bacillota
Eubacterium limosum 8486cho [QGUD]
21237
21164
-
Gly
TCC
[ENA]
¡û
>W1830013918
QNRX01000001
Bacillota
Alkalibaculum bacchi DSM 22112 [QNRX]
31325
31252
-
Gly
TCC
[ENA]
¡û
>W1830018996
QUDF01000007
Bacillota
Eubacterium sp. AM05-23 [QUDF]
254002
254075
+
Gly
TCC
[ENA]
¡û
>C11300214
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
922851
922924
+
Gly
TCC
[Ensembl]
¡û
>W11301100
AEQN01000009
Bacillota
Pseudoramibacter alactolyticus ATCC 23263 [AEQN]
14982
15055
+
Gly
TCC
[ENA]
¡û
>W1511705893
LGSS01000023
Bacillota
Gottschalkia purinilytica DSM 1384 [LGSS]
338
411
+
Gly
TCC
[ENA]
¡û
>W1511705912
LGSS01000047
Bacillota
Gottschalkia purinilytica DSM 1384 [LGSS]
1376
1303
-
Gly
TCC
[ENA]
¡û
>C163000467
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
3274561
3274488
-
Gly
TCC
[Ensembl]
¡û
>W1610788690
LOHE01000042
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
6093
6166
+
Gly
TCC
[ENA]
¡û
>W1610788707
LOHE01000043
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
205
278
+
Gly
TCC
[ENA]
¡û
>W1610788717
LOHE01000044
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
21147
21074
-
Gly
TCC
[ENA]
¡û
>W1730008780
FNJF01000028
Bacillota
Eubacterium maltosivorans limosum [FNJF]
20986
20913
-
Gly
TCC
[ENA]
¡û
>W1730008895
FNOU01000002
Bacillota
Eubacterium barkeri [FNOU]
46245
46172
-
Gly
TCC
[ENA]
¡û
>W1730009004
FNRK01000010
Bacillota
Eubacterium aggregans [FNRK]
37407
37334
-
Gly
TCC
[ENA]
¡û
>W1730009990
FOWI01000001
Bacillota
Eubacterium callanderi [FOWI]
700800
700873
+
Gly
TCC
[ENA]
¡û
>W1730010538
FRBP01000009
Bacillota
Eubacterium callanderi [FRBP]
199891
199964
+
Gly
TCC
[ENA]
¡û
>W1730010850
FWWT01000016
Bacillota
Desulfonispora thiosulfatigenes DSM 11270 [FWWT]
151611
151684
+
Gly
TCC
[ENA]
¡û
>W1730010851
FWWT01000017
Bacillota
Desulfonispora thiosulfatigenes DSM 11270 [FWWT]
147286
147359
+
Gly
TCC
[ENA]
¡û
>W1730029217
MIMZ01000006
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
21184
21111
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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