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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412479 (8 seq.)
>WENV180745725
ODHL01006218
[ODHL] human metagenome; G_DNA_L_Retroauricular crease
598
671
+
His
GTG
[ENA]
¡û
>WENV180855700
ODKY01003066
[ODKY] human metagenome; G_DNA_R_Retroauricular crease
404
478
+
His
GTG
[ENA]
¡û
>WENV180857585
ODLB01009054
[ODLB] human metagenome; G_DNA_L_Retroauricular crease
486
413
-
His
GTG
[ENA]
¡û
>WENV180878710
ODLX01010634
[ODLX] human metagenome; G_DNA_R_Retroauricular crease
109
183
+
His
GTG
[ENA]
¡û
>WENV180966678
ODUR01000001
[ODUR] human metagenome; G_DNA_Anterior nares
36675
36748
+
His
GTG
[ENA]
¡û
>WENV180966684
ODUR01000001
[ODUR] human metagenome; G_DNA_Anterior nares
403
330
-
His
GTG
[ENA]
¡û
>WENV180966996
ODUS01002054
[ODUS] human metagenome; G_DNA_L_Retroauricular crease
249
175
-
His
GTG
[ENA]
¡û
>WENV180972529
ODUV01005574
[ODUV] human metagenome; G_DNA_Anterior nares
109
182
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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