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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412812 (5 seq.)
>WENV180851796
ODKV01213848
[ODKV] human metagenome; G_DNA_Stool
64
138
+
Gly
CCC
[ENA]
¡û
>WENV181436932
OGDF01040549
[OGDF] human gut metagenome; human gut
1938
2012
+
Gly
CCC
[ENA]
¡û
>WENV181750819
OGQP01011549
[OGQP] human gut metagenome; faeces
1990
1916
-
Gly
CCC
[ENA]
¡û
>WENV182927502
OKUM01047957
[OKUM] human gut metagenome; feces
264
190
-
Gly
CCC
[ENA]
¡û
>WENV183480790
OMFJ01004408
[OMFJ] human gut metagenome; feces
2809
2735
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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