This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412944 (83 seq.)
>W1711069178
LSFL01000035
Bacteroidota
Polaribacter reichenbachii [LSFL]
519583
519656
+
Cys
GCA
[ENA]
¡û
>W1711069193
LSFM01000001
Bacteroidota
Polaribacter vadi [LSFM]
104659
104732
+
Cys
GCA
[ENA]
¡û
>W131175278
ARJD01000044
Bacteroidota
Polaribacter franzmannii ATCC 700399 [ARJD]
46214
46287
+
Cys
GCA
[ENA]
¡û
>W131175282
ARJD01000045
Bacteroidota
Polaribacter franzmannii ATCC 700399 [ARJD]
48527
48454
-
Cys
GCA
[ENA]
¡û
>W131175310
ARJD01000068
Bacteroidota
Polaribacter franzmannii ATCC 700399 [ARJD]
461488
461561
+
Cys
GCA
[ENA]
¡û
>W1711167262
LVWE01000028
Bacteroidota
Polaribacter atrinae [LVWE]
85120
85193
+
Cys
GCA
[ENA]
¡û
>W1711305191
MAKX01000001
Bacteroidota
Tenacibaculum soleae [MAKX]
446300
446227
-
Cys
GCA
[ENA]
¡û
>W131236228
AUMF01000017
Bacteroidota
Tenacibaculum ovolyticum DSM 18103 [AUMF]
72067
71994
-
Cys
GCA
[ENA]
¡û
>W1712097595
NIDK01000001
Bacteroidota
Polaribacter haliotis [NIDK]
412091
412164
+
Cys
GCA
[ENA]
¡û
>W1712097656
NIDL01000007
Bacteroidota
Polaribacter tangerinus WS2-14 [NIDL]
51311
51238
-
Cys
GCA
[ENA]
¡û
>C171063244
CP017477
Bacteroidota
Polaribacter vadi LPB0003 [CP017477]
2052583
2052510
-
Cys
GCA
-
¡û
>C171074126
CP018155
Bacteroidota
Tenacibaculum todarodis LPB0136 [CP018155]
2469996
2470069
+
Cys
GCA
-
¡û
>C171094210
CP019419
Bacteroidota
Polaribacter reichenbachii 6Alg 8T [CP019419]
822335
822262
-
Cys
GCA
-
¡û
>C171098472
CP019704
Bacteroidota
Polaribacter sp. BM10 [CP019704]
2115719
2115646
-
Cys
GCA
-
¡û
>w014168
AAOG01000001
Bacteroidota
Polaribacter irgensii 23-P [AAOG]
745411
745486
+
Cys
GCA
[ENA]
¡û
>w013066
AANA01000001
Bacteroidota
Polaribacter sp. MED152 MED152 [AANA]
2331356
2331431
+
Cys
GCA
[ENA]
¡û
>WENV180356601
OBNL01000169
[OBNL] marine metagenome; ENVO:00002010
2004
1933
-
Cys
GCA
[ENA]
¢þ
>WENV180585134
OCOK01008189
[OCOK] marine metagenome; ENVO:00002010
345
274
-
Cys
GCA
[ENA]
¢þ
>WENV180590431
OCOT01015647
[OCOT] marine metagenome; ENVO:00002010
335
264
-
Cys
GCA
[ENA]
¢þ
>WENV182547341
OJBS01000581
[OJBS] seawater metagenome; Sea water
4300
4229
-
Cys
GCA
[ENA]
¢þ
>WENV182547664
OJBT01000318
[OJBT] seawater metagenome; Sea water
7786
7715
-
Cys
GCA
[ENA]
¢þ
>WENV182558150
OJDL01008015
[OJDL] seawater metagenome; Sea water
72
1
-
Cys
GCA
[ENA]
¢þ
>WENV182558666
OJDN01000273
[OJDN] seawater metagenome; Sea water
404
333
-
Cys
GCA
[ENA]
¢þ
>WENV182564680
OJEF01003070
[OJEF] seawater metagenome; Sea water
4539
4610
+
Cys
GCA
[ENA]
¢þ
>WENV182567323
OJEO01000072
[OJEO] seawater metagenome; Sea water
13281
13210
-
Cys
GCA
[ENA]
¢þ
>WENV182567819
OJEP01000406
[OJEP] seawater metagenome; Sea water
11998
12069
+
Cys
GCA
[ENA]
¢þ
>WENV182578933
OJGP01022140
[OJGP] seawater metagenome; Sea water
237
166
-
Cys
GCA
[ENA]
¢þ
>WENV182588906
OJHY01001730
[OJHY] seawater metagenome; Sea water
1312
1241
-
Cys
GCA
[ENA]
¢þ
>WENV182590698
OJIK01000028
[OJIK] seawater metagenome; Sea water
3777
3706
-
Cys
GCA
[ENA]
¢þ
>WENV182594222
OJIV01001740
[OJIV] seawater metagenome; Sea water
3345
3416
+
Cys
GCA
[ENA]
¢þ
>WENV183061198
OLHZ01000947
[OLHZ] seawater metagenome; Sea water
2650
2579
-
Cys
GCA
[ENA]
¢þ
>WENV183615160
OOEA01084971
[OOEA] marine metagenome; sea ice
48
119
+
Cys
GCA
[ENA]
¢þ
>WENV183615766
OOEB01138108
[OOEB] marine metagenome; sea ice
140
69
-
Cys
GCA
[ENA]
¢þ
>WENV183616179
OOEC01135425
[OOEC] marine metagenome; sea ice
109
36
-
Cys
GCA
[ENA]
¢þ
>WENV183617130
OOEE01067191
[OOEE] marine metagenome; sea ice
77
6
-
Cys
GCA
[ENA]
¢þ
>WENV183617822
OOEG01134156
[OOEG] marine metagenome; sea ice
296
225
-
Cys
GCA
[ENA]
¢þ
>WENV183620576
OOFS01002747
[OOFS] marine metagenome; sea ice
637
564
-
Cys
GCA
[ENA]
¢þ
>WENV183623505
OOGA01005433
[OOGA] marine metagenome; sea ice
296
225
-
Cys
GCA
[ENA]
¢þ
>WENV170120255
CENJ01252963
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
592
665
+
Cys
GCA
[ENA]
¢þ
>WENV170296947
CESE01070997
[CESE] marine metagenome genome assembly TARA_085_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
479
406
-
Cys
GCA
[ENA]
¢þ
>WENV170306417
CESJ01030422
[CESJ] marine metagenome genome assembly TARA_084_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
785
712
-
Cys
GCA
[ENA]
¢þ
>WENV170537384
CEWR01003200
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
921
848
-
Cys
GCA
[ENA]
¢þ
>WENV170569357
FLMP01178450
[FLMP] seawater metagenome; seawater
204
131
-
Cys
GCA
[ENA]
¢þ
>WENV170621663
FUWD013067938
[FUWD] metagenome; unknown
1303
1230
-
Cys
GCA
[ENA]
¢þ
>WENV170624284
FUWD013179105
[FUWD] metagenome; unknown
37691
37618
-
Cys
GCA
[ENA]
¢þ
>WENV170624463
FUWD013182056
[FUWD] metagenome; unknown
1041
968
-
Cys
GCA
[ENA]
¢þ
>WENV170626545
FUWD013225022
[FUWD] metagenome; unknown
2883
2956
+
Cys
GCA
[ENA]
¢þ
>WENV170626546
FUWD013225023
[FUWD] metagenome; unknown
554
627
+
Cys
GCA
[ENA]
¢þ
>WENV170627394
FUWD013232667
[FUWD] metagenome; unknown
2144
2071
-
Cys
GCA
[ENA]
¢þ
>WENV170631813
FUWD013366414
[FUWD] metagenome; unknown
125800
125727
-
Cys
GCA
[ENA]
¢þ
>WENV170631990
FUWD013375706
[FUWD] metagenome; unknown
4458
4531
+
Cys
GCA
[ENA]
¢þ
>WENV170632748
FUWD013386899
[FUWD] metagenome; unknown
1041
968
-
Cys
GCA
[ENA]
¢þ
>WENV170646774
JQIA01002893
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
4482
4409
-
Cys
GCA
[ENA]
¢þ
>WENV170820543
MDSY01006487
[MDSY] marine metagenome; seawater
1533
1460
-
Cys
GCA
[ENA]
¢þ
>WENV170919133
MDTF01006266
[MDTF] marine metagenome; seawater
7694
7767
+
Cys
GCA
[ENA]
¢þ
>WENV170947823
MEHZ010952793
[MEHZ] marine metagenome; marine surface water
524
597
+
Cys
GCA
[ENA]
¢þ
>C181113413
CP025119
Bacteroidota
Polaribacter sp. ALD11 [CP025119]
2238996
2238923
-
Cys
GCA
-
¡û
>W141563392
JHZZ01000001
Bacteroidota
Polaribacter sp. Hel_I_88 [JHZZ]
1818087
1818160
+
Cys
GCA
[ENA]
¡û
>W1910785543
MQUA01000013
Bacteroidota
Polaribacter filamentus ATCC 700397 [MQUA]
2872043
2871972
-
Cys
GCA
[ENA]
¡û
>W1910796561
MSCK01000002
Bacteroidota
Polaribacter butkevichii KCTC 12100 [MSCK]
207256
207185
-
Cys
GCA
[ENA]
¡û
>W1910796625
MSCM01000002
Bacteroidota
Polaribacter glomeratus ATCC 43844 [MSCM]
1065463
1065534
+
Cys
GCA
[ENA]
¡û
>W1911501262
OENA01000038
Bacteroidota
Tenacibaculum finnmarkense TNO006 [OENA]
134164
134091
-
Cys
GCA
[ENA]
¡û
>W1911501297
OENB01000012
Bacteroidota
Tenacibaculum dicentrarchi TNO021 [OENB]
780435
780506
+
Cys
GCA
[ENA]
¡û
>W1911501331
OENC01000023
Bacteroidota
Tenacibaculum dicentrarchi type strain: TD3509 [OENC]
79537
79466
-
Cys
GCA
[ENA]
¡û
>W1911501373
OEND01000001
Bacteroidota
Tenacibaculum finnmarkense type strain: TFHFJ [OEND]
117897
117824
-
Cys
GCA
[ENA]
¡û
>W1911501464
OENF01000042
Bacteroidota
Tenacibaculum piscium TNO020 [OENF]
271705
271776
+
Cys
GCA
[ENA]
¡û
>W1911504337
OESZ01000001
Bacteroidota
Tenacibaculum dicentrarchi TDCHD05 [OESZ]
288643
288572
-
Cys
GCA
[ENA]
¡û
>W1810156050
PJBB01000003
Bacteroidota
Tenacibaculum sp. Bg11-29 [PJBB]
1033233
1033304
+
Cys
GCA
[ENA]
¡û
>W1810173106
PJMV01000001
Bacteroidota
Polaribacter sp. Hel1_33_96 [PJMV]
127682
127753
+
Cys
GCA
[ENA]
¡û
>W1511296846
JPDI01000001
Bacteroidota
Polaribacter sp. Hel1_33_49 [JPDI]
142680
142751
+
Cys
GCA
[ENA]
¡û
>W1511297083
JPDS01000002
Bacteroidota
Polaribacter sp. Hel1_85 [JPDS]
649807
649736
-
Cys
GCA
[ENA]
¡û
>W1511576839
LAQA01000052
Bacteroidota
Flavobacteriaceae bacterium ASP10-09a [LAQA]
7578
7651
+
Cys
GCA
[ENA]
¡û
>W1511576856
LAQB01000070
Bacteroidota
Polaribacter sp. ASP10-06a [LAQB]
22761
22688
-
Cys
GCA
[ENA]
¡û
>W1511694603
LGBR01000001
Bacteroidota
Polaribacter dokdonensis DSW-5 [LGBR]
967520
967447
-
Cys
GCA
[ENA]
¡û
>C161059111
CP013671
Bacteroidota
Tenacibaculum dicentrarchi AY7486TD [CP013671]
2875244
2875317
+
Cys
GCA
[Ensembl]
¡û
>W1610080957
BDCW01000074
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
74744
74817
+
Cys
GCA
[ENA]
¡û
>C131013424
CP004349
Bacteroidota
Polaribacter sp. MED152 [CP004349]
2325475
2325548
+
Cys
GCA
[Ensembl]
¡û
>W1610909706
LSFL01000035
Bacteroidota
Polaribacter reichenbachii [LSFL]
519583
519656
+
Cys
GCA
[ENA]
¡û
>W1610909721
LSFM01000001
Bacteroidota
Polaribacter vadi [LSFM]
104659
104732
+
Cys
GCA
[ENA]
¡û
>W1610977593
LVWE01000028
Bacteroidota
Polaribacter atrinae [LVWE]
85120
85193
+
Cys
GCA
[ENA]
¡û
>W1611054733
MAKX01000001
Bacteroidota
Tenacibaculum soleae [MAKX]
446300
446227
-
Cys
GCA
[ENA]
¡û
>W1710079608
BDCW01000074
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
74744
74817
+
Cys
GCA
[ENA]
¡û
>W1710537985
FNUE01000001
Bacteroidota
Polaribacter dokdonensis DSW-5 [FNUE]
1007943
1008016
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK