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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.41312 (81 seq.)
>W1711697396
MSKI01000085
Actinomycetota
Actinomyces oris [MSKI]
18889
18977
+
Pseudo
CGA
[ENA]
¡û
>W1711697414
MSKJ01000003
Actinomycetota
Actinomyces oris [MSKJ]
6871
6959
+
Pseudo
CGA
[ENA]
¡û
>W1711697894
MSKT01000008
Actinomycetota
Actinomyces oris [MSKT]
28222
28134
-
Pseudo
CGA
[ENA]
¡û
>W1711697941
MSKU01000009
Actinomycetota
Actinomyces oris [MSKU]
132290
132202
-
Pseudo
CGA
[ENA]
¡û
>W131222663
AUBL01000034
Actinomycetota
Actinomyces dentalis DSM 19115 [AUBL]
15295
15207
-
Pseudo
CGA
[ENA]
¡û
>WENV180142198
OATV01005438
[OATV] human gut metagenome; faeces
401
313
-
Ser
CGA
[ENA]
¡û
>W141024095
AKGF01000018
Actinomycetota
Actinomyces timonensis DSM 23838 [AKGF]
59710
59798
+
Pseudo
CGA
[ENA]
¡û
>WENV180410833
OBUX01010393
[OBUX] human gut metagenome; faeces
403
315
-
Ser
CGA
[ENA]
¡û
>WENV180428061
OBWB01004187
[OBWB] human gut metagenome; faeces
452
540
+
Ser
CGA
[ENA]
¡û
>WENV180697721
ODDE01003349
[ODDE] human metagenome; G_DNA_Supragingival plaque
1263
1175
-
Ser
CGA
[ENA]
¡û
>WENV180717962
ODGE01017307
[ODGE] human metagenome; G_DNA_Buccal mucosa
287
199
-
Ser
CGA
[ENA]
¡û
>WENV180721795
ODGL01013942
[ODGL] human metagenome; G_DNA_Subgingival plaque
765
853
+
Ser
CGA
[ENA]
¡û
>WENV180734947
ODGZ01038506
[ODGZ] human metagenome; G_DNA_Supragingival plaque
494
582
+
Ser
CGA
[ENA]
¡û
>WENV180738987
ODHD01002074
[ODHD] human metagenome; G_DNA_Supragingival plaque
4163
4251
+
Ser
CGA
[ENA]
¡û
>WENV180755267
ODHU01065756
[ODHU] human metagenome; G_DNA_Supragingival plaque
245
333
+
Ser
CGA
[ENA]
¡û
>WENV180758894
ODHX01069611
[ODHX] human metagenome; G_DNA_Buccal mucosa
51
139
+
Ser
CGA
[ENA]
¡û
>WENV180800875
ODJD01002339
[ODJD] human metagenome; G_DNA_Supragingival plaque
1051
963
-
Ser
CGA
[ENA]
¡û
>WENV180801395
ODJD01027019
[ODJD] human metagenome; G_DNA_Supragingival plaque
523
611
+
Ser
CGA
[ENA]
¡û
>WENV180801515
ODJD01045768
[ODJD] human metagenome; G_DNA_Supragingival plaque
89
1
-
Ser
CGA
[ENA]
¡û
>WENV180801836
ODJD01214538
[ODJD] human metagenome; G_DNA_Supragingival plaque
89
1
-
Ser
CGA
[ENA]
¡û
>WENV180834141
ODKD01004133
[ODKD] human metagenome; G_DNA_Supragingival plaque
5
93
+
Ser
CGA
[ENA]
¡û
>WENV180843504
ODKN01003877
[ODKN] human metagenome; G_DNA_Supragingival plaque
4164
4252
+
Ser
CGA
[ENA]
¡û
>WENV180844093
ODKN01034142
[ODKN] human metagenome; G_DNA_Supragingival plaque
621
709
+
Ser
CGA
[ENA]
¡û
>WENV180891934
ODMQ01049239
[ODMQ] human metagenome; G_DNA_Supragingival plaque
225
313
+
Ser
CGA
[ENA]
¡û
>WENV180923031
ODTJ01032641
[ODTJ] human metagenome; G_DNA_Supragingival plaque
606
518
-
Ser
CGA
[ENA]
¡û
>WENV180923138
ODTJ01049977
[ODTJ] human metagenome; G_DNA_Supragingival plaque
542
630
+
Ser
CGA
[ENA]
¡û
>WENV180923239
ODTJ01079993
[ODTJ] human metagenome; G_DNA_Supragingival plaque
6
94
+
Ser
CGA
[ENA]
¡û
>WENV180988837
ODVL01013726
[ODVL] human metagenome; G_DNA_Tongue dorsum
226
314
+
Ser
CGA
[ENA]
¡û
>WENV181019555
ODWU01005873
[ODWU] human metagenome; G_DNA_Supragingival plaque
89
1
-
Ser
CGA
[ENA]
¡û
>WENV181049942
ODYD01003539
[ODYD] human metagenome; G_DNA_Supragingival plaque
1801
1713
-
Ser
CGA
[ENA]
¡û
>WENV181050572
ODYD01027806
[ODYD] human metagenome; G_DNA_Supragingival plaque
569
657
+
Ser
CGA
[ENA]
¡û
>WENV181050655
ODYD01038337
[ODYD] human metagenome; G_DNA_Supragingival plaque
127
215
+
Ser
CGA
[ENA]
¡û
>WENV181051100
ODYD01185379
[ODYD] human metagenome; G_DNA_Supragingival plaque
285
197
-
Ser
CGA
[ENA]
¡û
>WENV181066043
ODYV01034032
[ODYV] human metagenome; G_DNA_Buccal mucosa
292
204
-
Ser
CGA
[ENA]
¡û
>WENV181070534
OEAE01002918
[OEAE] human metagenome; G_DNA_Supragingival plaque
4480
4568
+
Ser
CGA
[ENA]
¡û
>WENV181080527
OEAS01053766
[OEAS] human metagenome; G_DNA_Supragingival plaque
6
94
+
Ser
CGA
[ENA]
¡û
>WENV181120377
OEFJ01062473
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
118
206
+
Ser
CGA
[ENA]
¡û
>WENV181136403
OEGI01005515
[OEGI] human metagenome; G_DNA_Supragingival plaque
2203
2115
-
Ser
CGA
[ENA]
¡û
>WENV181146240
OEHQ01002150
[OEHQ] human metagenome; G_DNA_Supragingival plaque
7854
7766
-
Ser
CGA
[ENA]
¡û
>WENV182636518
OJKZ01012360
[OJKZ] metagenome; surface
971
883
-
Ser
CGA
[ENA]
¡û
>WENV182641185
OJLE01023105
[OJLE] metagenome; surface
682
594
-
Ser
CGA
[ENA]
¡û
>WENV182815053
OJYO01000538
[OJYO] human gut metagenome; human gut
1443
1531
+
Ser
CGA
[ENA]
¡û
>WENV182846020
OKJI01000402
[OKJI] human gut metagenome; human gut
4400
4488
+
Ser
CGA
[ENA]
¡û
>WENV182857495
OKNX01003077
[OKNX] human gut metagenome; human gut
241
329
+
Ser
CGA
[ENA]
¡û
>WENV183132640
OLOB01004711
[OLOB] human gut metagenome; faeces
5208
5296
+
Ser
CGA
[ENA]
¡û
>WENV183511013
OMHV01000913
[OMHV] human oral metagenome; human oral
1372
1460
+
Ser
CGA
[ENA]
¡û
>C191030338
CP025227
Actinomycetota
Actinomyces wuliandei 299 [CP025227]
2943247
2943160
-
Ser
CGA
-
¡û
>C191208636
LR134357
Actinomycetota
Actinomyces israelii NCTC12972 [LR134357]
2087046
2086958
-
Ser
CGA
-
¡û
>C191211582
LR134477
Actinomycetota
Actinomyces viscosus NCTC10951 [LR134477]
2451803
2451715
-
Ser
CGA
-
¡û
>W09121432
ACFH01000060
Actinomycetota
Actinomyces urogenitalis DSM 15434 [ACFH]
12556
12468
-
Ser
CGA
[ENA]
¡û
>W1911798522
QYRR01000002
Actinomycetota
Actinomyces sp. 2119 [QYRR]
313792
313879
+
Ser
CGA
[ENA]
¡û
>W1810186619
PKHA01000006
Actinomycetota
Actinomyces urogenitalis UMB0319 [PKHA]
12459
12371
-
Ser
CGA
[ENA]
¡û
>W1810191213
PKKK01000006
Actinomycetota
Actinomyces naeslundii UMB0731 [PKKK]
28063
28151
+
Ser
CGA
[ENA]
¡û
>W1810191247
PKKL01000003
Actinomycetota
Actinomyces oris UMB0183 [PKKL]
340778
340690
-
Ser
CGA
[ENA]
¡û
>W1810191403
PKKP01000001
Actinomycetota
Actinomyces naeslundii UMB0181 [PKKP]
555670
555758
+
Ser
CGA
[ENA]
¡û
>W1810705145
QMIN01000071
Actinomycetota
Actinomyces sp. Z5 [QMIN]
20004
19916
-
Ser
CGA
[ENA]
¡û
>W1810705198
QMIO01000017
Actinomycetota
Actinomyces sp. Z3 [QMIO]
17063
16975
-
Ser
CGA
[ENA]
¡û
>W2010575082
JAAVTM010000001
Actinomycetota
Actinomyces sp. ZJ34 [JAAVTM]
952097
952185
+
Ser
CGA
[ENA]
¡û
>W2011195604
PIZB01000035
Actinomycetota
Actinomyces sp. 340 [PIZB]
13613
13700
+
Ser
CGA
[ENA]
¡û
>W2011343490
QYRR01000002
Actinomycetota
Actinomyces sp. 2119 [QYRR]
313792
313879
+
Ser
CGA
[ENA]
¡û
>W2011484405
RQZC01000012
Actinomycetota
Actinomyces bowdenii OH5050 [RQZC]
80137
80051
-
Ser
CGA
[ENA]
¡û
>W2011674375
SPQV01000014
Actinomycetota
Actinomyces sp. dk752 [SPQV]
23579
23667
+
Ser
CGA
[ENA]
¡û
>W2012036874
VICC01000001
Actinomycetota
Actinomyces oris CCUG 34288 [VICC]
140966
140878
-
Ser
CGA
[ENA]
¡û
>W2012197087
VWPE01000028
Actinomycetota
Actinomyces sp. zg328 [VWPE]
16234
16322
+
Ser
CGA
[ENA]
¡û
>W2012206732
VXKM01000027
Actinomycetota
Actinomyces johnsonii CCUG 34287T [VXKM]
1519
1431
-
Ser
CGA
[ENA]
¡û
>W2110074352
CABFLV010000020
Actinomycetota
Actinomyces naeslundii [CABFLV]
40545
40457
-
Ser
CGA
[ENA]
¡û
>W2110246411
JACOQB010000004
Actinomycetota
Actinomyces sp. zg-987 [JACOQB]
126044
125956
-
Ser
CGA
[ENA]
¡û
>W10103565
ACRE01000038
Actinomycetota
Actinomyces viscosus C505 [ACRE]
2311
2223
-
Pseudo
CGA
[ENA]
¡û
>C201266161
CP053642
Actinomycetota
Actinomyces sp. zg-325 [CP053642]
2289220
2289132
-
Ser
CGA
-
¡û
>C211115942
CP058259
Actinomycetota
Actinomyces sp. oral taxon 169 F0496 [CP058259]
206068
206156
+
Ser
CGA
-
¡û
>C211198773
CP065027
Actinomycetota
Actinomyces sp. zg-993 [CP065027]
2376765
2376677
-
Ser
CGA
-
¡û
>C211221462
CP066060
Actinomycetota
Actinomyces oris FDAARGOS_1051 [CP066060]
2558056
2557968
-
Ser
CGA
-
¡û
>C211239607
CP068012
Actinomycetota
Actinomyces sp. HMT 175 [CP068012]
196947
197035
+
Ser
CGA
-
¡û
>C241253373
CP124548
Actinomycetota
Actinomyces israelii F0345 [CP124548]
3700584
3700497
-
Ser
CGA
-
¡û
>W11103773
ACRE01000038
Actinomycetota
Actinomyces viscosus C505 [ACRE]
2311
2223
-
Ser
CGA
[ENA]
¡û
>W11133248
AECW01000479
Actinomycetota
Actinomyces sp. oral taxon 171 oral taxon 171 str. F0337 [AECW]
434
522
+
Ser
CGA
[ENA]
¡û
>W11156719
AFBL01000091
Actinomycetota
Actinomyces sp. oral taxon 170 oral taxon 170 str. F0386 [AFBL]
108687
108775
+
Ser
CGA
[ENA]
¡û
>W11174495
AFUR01000004
Actinomycetota
Actinomyces sp. oral taxon 175 oral taxon 175 str. F0384 [AFUR]
59288
59376
+
Ser
CGA
[ENA]
¡û
>W1710082817
BDIO01000006
Actinomycetota
Actinomyces denticolens [BDIO]
1495446
1495534
+
Pseudo
CGA
[ENA]
¡û
>W1710523251
FNHU01000016
Actinomycetota
Actinomyces ruminicola [FNHU]
26798
26886
+
Pseudo
CGA
[ENA]
¡û
>W1710587382
FQYL01000005
Actinomycetota
Actinomyces denticolens [FQYL]
50060
50148
+
Pseudo
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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