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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413166 (40 seq.)
>C171127305
CP021987
Mycoplasmatota
Ureaplasma parvum hebnu3h04 [CP021987]
261370
261297
-
Gly
GCC
-
¡û
>C171127314
CP021988
Mycoplasmatota
Ureaplasma parvum hebnu3h05 [CP021988]
467446
467519
+
Gly
GCC
-
¡û
>C171127358
CP021989
Mycoplasmatota
Ureaplasma parvum hebnu3h07 [CP021989]
374246
374173
-
Gly
GCC
-
¡û
>C171127367
CP021990
Mycoplasmatota
Ureaplasma parvum hebnu1229 [CP021990]
519242
519315
+
Gly
GCC
-
¡û
>C171127393
CP021991
Mycoplasmatota
Ureaplasma parvum hebnu uu3 [CP021991]
258941
259014
+
Gly
GCC
-
¡û
>C026058
AF222894
Mycoplasmatota
Ureaplasma parvum [AF222894]
151584
151657
+
Gly
GCC
[Ensembl]
¡û
>w025450
AAZT01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 12 [AAZT]
109600
109530
-
Gly
GCC
[ENA]
¡û
>w025423
AAZS01000002
Mycoplasmatota
Ureaplasma urealyticum serovar 11 [AAZS]
107689
107619
-
Gly
GCC
[ENA]
¡û
>w025377
AAZR01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 5 [AAZR]
192593
192666
+
Gly
GCC
[ENA]
¡û
>w025374
AAZQ01000002
Mycoplasmatota
Ureaplasma parvum serovar 6 [AAZQ]
176826
176756
-
Gly
GCC
[ENA]
¡û
>w024358
AAYQ01000026
Mycoplasmatota
Ureaplasma urealyticum serovar 9 [AAYQ]
993
923
-
Gly
GCC
[ENA]
¡û
>w024323
AAYP01000002
Mycoplasmatota
Ureaplasma urealyticum serovar 7 [AAYP]
11007
11080
+
Gly
GCC
[ENA]
¡û
>w024296
AAYO01000003
Mycoplasmatota
Ureaplasma urealyticum serovar 4 [AAYO]
108979
108909
-
Gly
GCC
[ENA]
¡û
>w024276
AAYN01000010
Mycoplasmatota
Ureaplasma urealyticum serovar 8 [AAYN]
5103
5033
-
Gly
GCC
[ENA]
¡û
>w024274
AAYN01000007
Mycoplasmatota
Ureaplasma urealyticum serovar 8 [AAYN]
39370
39300
-
Gly
GCC
[ENA]
¡û
>w024249
AAYN01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 8 [AAYN]
346062
346135
+
Gly
GCC
[ENA]
¡û
>w024240
AAYM01000003
Mycoplasmatota
Ureaplasma parvum serovar 3 [AAYM]
2158
2231
+
Gly
GCC
[ENA]
¡û
>WENV180225678
OBBO01000009
[OBBO] human gut metagenome; Infant 2 DOL 5 gut
171885
171812
-
Gly
GCC
[ENA]
¢þ
>WENV180554106
OCJM01000103
[OCJM] human gut metagenome; Infant 2 DOL 6 gut
1951
1878
-
Gly
GCC
[ENA]
¢þ
>WENV180822741
ODJV01000068
[ODJV] human metagenome; G_DNA_Posterior fornix
1572
1499
-
Gly
GCC
[ENA]
¢þ
>W08002238
ABER01000002
Mycoplasmatota
Ureaplasma parvum serovar 14 str. ATCC 33697 [ABER]
26240
26313
+
Gly
GCC
[ENA]
¡û
>W08002247
ABES01000001
Mycoplasmatota
Ureaplasma parvum serovar 1 str. ATCC 27813 [ABES]
472952
473025
+
Gly
GCC
[ENA]
¡û
>W08002292
ABET01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 10 [ABET]
288938
288868
-
Gly
GCC
[ENA]
¡û
>W08002318
ABEV01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 13 str. ATCC 33698 [ABEV]
187402
187332
-
Gly
GCC
[ENA]
¡û
>W08002822
ABFL01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 2 [ABFL]
278155
278085
-
Gly
GCC
[ENA]
¡û
>C08011083
CP000942
Mycoplasmatota
Ureaplasma parvum serovar 3 str. ATCC 27815 [CP000942]
151614
151687
+
Gly
GCC
[Ensembl]
¡û
>WENV170715704
LQAB01011604
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
496
569
+
Gly
GCC
[ENA]
¢þ
>C191003511
AP018561
Mycoplasmatota
Ureaplasma parvum serovar 3 OMC-P162 [AP018561]
723132
723205
+
Gly
GCC
-
¡û
>C191189275
HG937516
Mycoplasmatota
Mycoplasma amphoriforme A39 [HG937516]
423586
423659
+
Gly
GCC
-
¡û
>C09110768
CP001184
Mycoplasmatota
Ureaplasma urealyticum serovar 10 str. ATCC 33699 [CP001184]
155657
155730
+
Gly
GCC
[Ensembl]
¡û
>W1911824647
QZWO01000002
Mycoplasmatota
Ureaplasma urealyticum 445 [QZWO]
5762
5689
-
Gly
GCC
[ENA]
¡û
>W1810735655
QOKT01000003
Mycoplasmatota
Ureaplasma urealyticum 1000 [QOKT]
118599
118672
+
Gly
GCC
[ENA]
¡û
>W1810757231
QPHI01000020
Mycoplasmatota
Ureaplasma parvum 445a [QPHI]
7705
7778
+
Gly
GCC
[ENA]
¡û
>W1810757257
QPHJ01000023
Mycoplasmatota
Ureaplasma urealyticum 1000a [QPHJ]
8033
8106
+
Gly
GCC
[ENA]
¡û
>C151002401
AP014584
Mycoplasmatota
Ureaplasma parvum serovar 3 SV3F4 [AP014584]
27178
27105
-
Gly
GCC
[Ensembl]
¡û
>C161022166
CP009770
Mycoplasmatota
Ureaplasma diversum ATCC 49782 [CP009770]
919032
919105
+
Gly
GCC
-
¡û
>W121060665
AJFX01000010
Mycoplasmatota
Ureaplasma urealyticum 2033 [AJFX]
80569
80496
-
Gly
GCC
[ENA]
¡û
>W121060696
AJFY01000010
Mycoplasmatota
Ureaplasma urealyticum 2608 [AJFY]
1847
1920
+
Gly
GCC
[ENA]
¡û
>W121060699
AJFZ01000004
Mycoplasmatota
Ureaplasma urealyticum 4155 [AJFZ]
186423
186350
-
Gly
GCC
[ENA]
¡û
>W121060726
AJGA01000007
Mycoplasmatota
Ureaplasma urealyticum 4318 [AJGA]
187857
187784
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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