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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413330 (31 seq.)
>W1711352246
MDDB01000001
Bacillota
Moorella thermoacetica [MDDB]
117650
117723
+
Gln
CTG
[ENA]
¡û
>W1711352337
MDDC01000011
Bacillota
Moorella thermoacetica [MDDC]
5173
5100
-
Gln
CTG
[ENA]
¡û
>W1711352348
MDDD01000001
Bacillota
Moorella thermoacetica [MDDD]
117231
117304
+
Gln
CTG
[ENA]
¡û
>W1711352435
MDDE01000005
Bacillota
Moorella thermoacetica [MDDE]
48538
48465
-
Gln
CTG
[ENA]
¡û
>W1711428546
MIHH01000007
Bacillota
Moorella thermoacetica [MIHH]
117780
117853
+
Gln
CTG
[ENA]
¡û
>W1711428566
MIIF01000001
Bacillota
Moorella thermoacetica [MIIF]
151650
151723
+
Gln
CTG
[ENA]
¡û
>W1711629255
MPOT01000057
Bacillota
Tepidanaerobacter sp. EBM-38 [MPOT]
33193
33120
-
Gln
CTG
[ENA]
¡û
>C171055188
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
1315448
1315521
+
Gln
CTG
-
¡û
>C171058954
CP017237
Bacillota
Moorella thermoacetica DSM 103284 [CP017237]
1087002
1087075
+
Gln
CTG
-
¡û
>C014173
CP000232
Bacillota
Moorella thermoacetica [CP000232]
1160077
1160150
+
Gln
CTG
[Ensembl]
¡û
>W141229815
BARR01000042
Bacillota
Moorella thermoacetica Y72 [BARR]
129962
130035
+
Gln
CTG
[ENA]
¡û
>WENV170562544
CZCB01003494
[CZCB] anaerobic digester metagenome; anaerobic digester
12467
12394
-
Gln
CTG
[ENA]
¢þ
>WENV170686328
LFRM01139023
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
5452
5525
+
Gln
CTG
[ENA]
¢þ
>WENV170720722
LSQX01163666
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
6242
6169
-
Gln
CTG
[ENA]
¢þ
>WENV170723501
LSQX01271170
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
13678
13751
+
Gln
CTG
[ENA]
¢þ
>WENV170724326
LSQX01301063
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2613
2540
-
Gln
CTG
[ENA]
¢þ
>WENV170969694
MTKW01037113
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
75
2
-
Gln
CTG
[ENA]
¢þ
>C191073430
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
1164317
1164390
+
Gln
CTG
-
¡û
>W09100933
AADT03000019
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
14796
14869
+
Gln
CTG
[ENA]
¡û
>W1910180065
BJKN01000002
Bacillota
Moorella sp. E308F [BJKN]
319272
319345
+
Gln
CTG
[ENA]
¡û
>W1910180116
BJKO01000001
Bacillota
Moorella sp. E306M [BJKO]
2871229
2871156
-
Gln
CTG
[ENA]
¡û
>W1810010430
BFFN01000004
Bacillota
Moorella sp. Hama-1 [BFFN]
119102
119029
-
Gln
CTG
[ENA]
¡û
>W1810367298
PVXL01000055
Bacillota
Moorella stamsii DSM 26271 [PVXL]
97053
96980
-
Gln
CTG
[ENA]
¡û
>W1810367314
PVXM01000004
Bacillota
Moorella humiferrea DSM 23265 [PVXM]
53291
53364
+
Gln
CTG
[ENA]
¡û
>C151094358
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
1054804
1054877
+
Gln
CTG
-
¡û
>C151094409
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
1154339
1154412
+
Gln
CTG
-
¡û
>W1510100291
CELZ01000061
Bacillota
Moorella glycerini NMP [CELZ]
92286
92213
-
Gln
CTG
[ENA]
¡û
>C11122599
CP002728
Bacillota
Tepidanaerobacter acetatoxydans Re1 [CP002728]
1110704
1110631
-
Gln
CTG
[Ensembl]
¡û
>C131020980
HF563609
Bacillota
Tepidanaerobacter acetatoxydans Re1 [HF563609]
1111388
1111315
-
Gln
CTG
-
¡û
>W1610605906
LFSJ01000074
Bacillota
Tepidanaerobacter sp. DTU063 [LFSJ]
5452
5525
+
Gln
CTG
[ENA]
¡û
>W1710727193
LFSJ01000074
Bacillota
Tepidanaerobacter sp. DTU063 [LFSJ]
5452
5525
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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