This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413503 (13 seq.)
>W1711342452
MCHF01000028
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
24201
24274
+
Trp
CCA
[ENA]
¡û
>W141088286
AUUR01000103
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
15634
15561
-
Trp
CCA
[ENA]
¡û
>W141246559
CANE01000019
Bacillota
Dehalobacter restrictus E1 [CANE]
41401
41328
-
Trp
CCA
[ENA]
¡û
>W141246615
CANF01000045
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
41282
41209
-
Trp
CCA
[ENA]
¡û
>WENV170004270
AGTN01623107
[AGTN] bioreactor metagenome; poplar biomass
435
362
-
Trp
CCA
[ENA]
¢þ
>WENV170659024
JXWO01000065
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
19069
19142
+
Trp
CCA
[ENA]
¢þ
>C141011753
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
1650710
1650783
+
Trp
CCA
[Ensembl]
¡û
>W1910647153
LXPC01000006
Bacillota
Dehalobacter sp. MCB1 [LXPC]
2201
2128
-
Trp
CCA
[ENA]
¡û
>C11120629
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
2061475
2061548
+
Trp
CCA
[Ensembl]
¡û
>C121005958
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
3452252
3452325
+
Trp
CCA
[Ensembl]
¡û
>W121036146
AHLV01000002
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
1547557
1547630
+
Trp
CCA
[ENA]
¡û
>C131008515
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
806968
807041
+
Trp
CCA
[Ensembl]
¡û
>C131008566
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
871589
871662
+
Trp
CCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK