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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413551 (4 seq.)
>WENV181374048
OFQY01001335
[OFQY] wastewater metagenome; Exp Tend VB 10WW
1203
1129
-
Trp
CCA
[ENA]
¡û
>WENV181382485
OFRG01001310
[OFRG] wastewater metagenome; WWTP Verbania (Effluent)
1208
1134
-
Trp
CCA
[ENA]
¡û
>WENV181387811
OFRM01001516
[OFRM] wastewater metagenome; Exp Tend VB 0WW
1212
1138
-
Trp
CCA
[ENA]
¡û
>WENV181399318
OFSE01022922
[OFSE] wastewater metagenome; Exp Tend VB 50WW
168
240
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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