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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413596 (32 seq.)
>W131002825
AGZL01000026
Bacteroidota
Myroides odoratimimus CCUG 12700 [AGZL]
88179
88106
-
Cys
GCA
[ENA]
¡û
>W1710990993
LPXI01000034
Bacteroidota
Myroides marinus [LPXI]
42312
42385
+
Cys
GCA
[ENA]
¡û
>W1711005743
LQNU01000053
Bacteroidota
Myroides marinus [LQNU]
184196
184269
+
Cys
GCA
[ENA]
¡û
>W1711047418
LROZ01000009
Bacteroidota
Myroides odoratus [LROZ]
40437
40508
+
Cys
GCA
[ENA]
¡û
>C171067469
CP017769
Bacteroidota
Myroides sp. ZB35 [CP017769]
1156126
1156053
-
Cys
GCA
-
¡û
>W141008095
AGZJ01000038
Bacteroidota
Myroides odoratus CIP 103059 [AGZJ]
41759
41688
-
Cys
GCA
[ENA]
¡û
>W141008159
AGZK01000030
Bacteroidota
Myroides odoratimimus CCUG 3837 [AGZK]
90646
90573
-
Cys
GCA
[ENA]
¡û
>W141094573
AVCS01000006
Bacteroidota
Flavobacterium enshiense DK69 [AVCS]
5654
5727
+
Cys
GCA
[ENA]
¡û
>WENV181402056
OFTY01000062
[OFTY] sludge metagenome; sludge
79475
79404
-
Cys
GCA
[ENA]
¢þ
>W141188500
AYMS01000107
Bacteroidota
Myroides odoratimimus H1bi [AYMS]
37183
37256
+
Cys
GCA
[ENA]
¡û
>C191153050
CP037427
Bacteroidota
Myroides odoratimimus G13 [CP037427]
1117115
1117044
-
Cys
GCA
-
¡û
>W1911243245
NSGJ01000017
Bacteroidota
Myroides sp. N17-2 [NSGJ]
8842
8913
+
Cys
GCA
[ENA]
¡û
>C151066985
CP010327
Bacteroidota
Myroides sp. A21 [CP010327]
1215790
1215717
-
Cys
GCA
[Ensembl]
¡û
>C151072941
CP010817
Bacteroidota
Myroides profundi D25 [CP010817]
9141
9068
-
Cys
GCA
[Ensembl]
¡û
>W1511481062
JWJO01000014
Bacteroidota
Myroides marinus L41 [JWJO]
42947
42874
-
Cys
GCA
[ENA]
¡û
>C161059460
CP013690
Bacteroidota
Myroides odoratimimus PR63039 [CP013690]
1171738
1171665
-
Cys
GCA
[Ensembl]
¡û
>W121009089
AGEC01000005
Bacteroidota
Myroides odoratimimus CCUG 10230 [AGEC]
212124
212197
+
Cys
GCA
[ENA]
¡û
>W121009145
AGED01000001
Bacteroidota
Myroides odoratimimus CCUG 12901 [AGED]
93049
92976
-
Cys
GCA
[ENA]
¡û
>W121009217
AGEE01000001
Bacteroidota
Myroides odoratimimus CIP 101113 [AGEE]
92332
92259
-
Cys
GCA
[ENA]
¡û
>W121034491
AHKQ01000021
Bacteroidota
Myroides odoratus DSM 2801 [AHKQ]
89679
89608
-
Cys
GCA
[ENA]
¡û
>W121124102
BAEX01000011
Bacteroidota
Myroides injenensis M09-0166 [BAEX]
3320
3393
+
Cys
GCA
[ENA]
¡û
>W1610061473
BCMQ01000002
Bacteroidota
Myroides odoratimimus [BCMQ]
89912
89839
-
Cys
GCA
[ENA]
¡û
>W1610534989
JRLU01000006
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
58021
58094
+
Cys
GCA
[ENA]
¡û
>W1610845665
LPXI01000034
Bacteroidota
Myroides marinus [LPXI]
42312
42385
+
Cys
GCA
[ENA]
¡û
>W1610856393
LQNU01000053
Bacteroidota
Myroides marinus [LQNU]
184196
184269
+
Cys
GCA
[ENA]
¡û
>W1610888547
LROZ01000009
Bacteroidota
Myroides odoratus [LROZ]
40437
40508
+
Cys
GCA
[ENA]
¡û
>W1710059138
BCMQ01000002
Bacteroidota
Myroides odoratimimus [BCMQ]
89912
89839
-
Cys
GCA
[ENA]
¡û
>W1710517842
FNDQ01000001
Bacteroidota
Myroides phaeus [FNDQ]
156703
156776
+
Cys
GCA
[ENA]
¡û
>W1710541886
FNYS01000002
Bacteroidota
Myroides marinus [FNYS]
410661
410734
+
Cys
GCA
[ENA]
¡û
>W1710551246
FOFY01000001
Bacteroidota
Myroides profundi [FOFY]
520872
520945
+
Cys
GCA
[ENA]
¡û
>W1710591184
FRBO01000001
Bacteroidota
Myroides odoratimimus xuanwuensis [FRBO]
88323
88250
-
Cys
GCA
[ENA]
¡û
>W1710637225
JRLU01000006
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
58021
58094
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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