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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413604 (4 seq.)
>WENV181373959
OFQY01000782
[OFQY] wastewater metagenome; Exp Tend VB 10WW
4993
5067
+
Thr
CGT
[ENA]
¡û
>WENV181382953
OFRG01007422
[OFRG] wastewater metagenome; WWTP Verbania (Effluent)
2158
2232
+
Thr
CGT
[ENA]
¡û
>WENV181388124
OFRM01005558
[OFRM] wastewater metagenome; Exp Tend VB 0WW
966
1040
+
Thr
CGT
[ENA]
¡û
>WENV181399322
OFSE01023314
[OFSE] wastewater metagenome; Exp Tend VB 50WW
794
720
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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