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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413626 (78 seq.)
>W1710797305
LJSY01000013
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO18 [LJSY]
68850
68777
-
Gly
TCC
[ENA]
¡û
>W131180839
ARNL01000035
Alphaproteobacteria
Yoonia vestfoldensis DSM 16212 [ARNL]
64084
64011
-
Gly
TCC
[ENA]
¡û
>W1711421726
MHZR01000105
Alphaproteobacteria
Rhodobacteraceae bacterium GWE1_64_9 [MHZR]
3550
3623
+
Gly
TCC
[ENA]
¡û
>W1711421777
MHZS01000200
Alphaproteobacteria
Rhodobacteraceae bacterium GWF1_65_7 [MHZS]
10416
10489
+
Gly
TCC
[ENA]
¡û
>W1711744293
MUHR01000005
Alphaproteobacteria
Planktotalea arctica IMCC9565 [MUHR]
539901
539974
+
Gly
TCC
[ENA]
¡û
>C171108667
CP020474
Alphaproteobacteria
Roseovarius mucosus SMR3 [CP020474]
3555287
3555360
+
Gly
TCC
-
¡û
>C171118931
CP021431
Alphaproteobacteria
Yoonia vestfoldensis SMR4r [CP021431]
519324
519397
+
Gly
TCC
-
¡û
>w027994
ABCR01000002
Alphaproteobacteria
Roseobacter sp. AzwK-3b [ABCR]
267289
267364
+
Gly
TCC
[ENA]
¡û
>w027728
ABCL01000002
Alphaproteobacteria
Roseovarius sp. TM1035 [ABCL]
331843
331916
+
Gly
TCC
[ENA]
¡û
>w018841
AATQ01000055
Alphaproteobacteria
Salipiger bermudensis HTCC2601 [AATQ]
25156
25231
+
Gly
TCC
[ENA]
¡û
>w012886
AAMV01000019
Alphaproteobacteria
Roseovarius sp. 217 [AAMV]
27527
27457
-
Gly
TCC
[ENA]
¡û
>w012724
AAMS01000001
Alphaproteobacteria
Yoonia vestfoldensis SKA53 [AAMS]
89501
89431
-
Gly
TCC
[ENA]
¡û
>WENV180014129
FPIC01061675
[FPIC] soil metagenome; Soil
180
253
+
Gly
TCC
[ENA]
¢þ
>W141020489
AJKJ01000136
Alphaproteobacteria
Citreicella sp. 357 [AJKJ]
16176
16249
+
Gly
TCC
[ENA]
¡û
>WENV180358371
OBNP01042672
[OBNP] marine metagenome; seawater
36
109
+
Gly
TCC
[ENA]
¢þ
>WENV180364113
OBNZ01095448
[OBNZ] marine metagenome; ENVO:00002010
48
121
+
Gly
TCC
[ENA]
¢þ
>W141082496
AUNB01000013
Alphaproteobacteria
Thioclava indica DT23-4 [AUNB]
29196
29123
-
Gly
TCC
[ENA]
¡û
>WENV181222762
OFDC01000230
[OFDC] hot springs metagenome; Water
33100
33173
+
Gly
TCC
[ENA]
¢þ
>WENV181227018
OFDN01000994
[OFDN] hot springs metagenome; Water
13239
13166
-
Gly
TCC
[ENA]
¢þ
>WENV181234020
OFET01000888
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
11618
11691
+
Gly
TCC
[ENA]
¢þ
>WENV181234103
OFET01003273
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
1149
1076
-
Gly
TCC
[ENA]
¢þ
>WENV181234418
OFEU01000113
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
11619
11692
+
Gly
TCC
[ENA]
¢þ
>W141142897
AWRV01000123
Alphaproteobacteria
Rhodobacteraceae bacterium PD-2 [AWRV]
7789
7862
+
Gly
TCC
[ENA]
¡û
>WENV182546455
OJBO01041648
[OJBO] seawater metagenome; Sea water
225
152
-
Gly
TCC
[ENA]
¢þ
>WENV182578949
OJGP01029083
[OJGP] seawater metagenome; Sea water
448
521
+
Gly
CCC
[ENA]
¢þ
>WENV182591900
OJIO01013406
[OJIO] seawater metagenome; Sea water
909
836
-
Gly
TCC
[ENA]
¢þ
>W141278712
JAFT01000005
Alphaproteobacteria
Oceanicola sp. HL-35 [JAFT]
2345376
2345449
+
Gly
TCC
[ENA]
¡û
>WENV183707667
PDWI01009833
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1238
1165
-
Gly
TCC
[ENA]
¢þ
>WENV183708833
PDWI01020299
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
5186
5259
+
Gly
TCC
[ENA]
¢þ
>WENV183711184
PDWI01062739
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
655
582
-
Gly
TCC
[ENA]
¢þ
>WENV183731044
PJTS01005188
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
188
261
+
Gly
TCC
[ENA]
¢þ
>WENV170024131
BCQL01022705
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
298
371
+
Gly
TCC
[ENA]
¢þ
>WENV170260519
CEQZ01055965
[CEQZ] marine metagenome genome assembly TARA_070_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1021
948
-
Gly
TCC
[ENA]
¢þ
>WENV170269034
CERH01028023
[CERH] marine metagenome genome assembly TARA_072_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4578
4505
-
Gly
TCC
[ENA]
¢þ
>WENV170621159
FUWD013050632
[FUWD] metagenome; unknown
2109
2036
-
Gly
TCC
[ENA]
¢þ
>WENV170629326
FUWD013267257
[FUWD] metagenome; unknown
2109
2036
-
Gly
TCC
[ENA]
¢þ
>WENV170634337
FYBJ01000232
[FYBJ] marine metagenome; marine
17772
17699
-
Gly
TCC
[ENA]
¢þ
>WENV170680671
LFEF01008706
[LFEF] freshwater metagenome; waterbloom
576
503
-
Gly
TCC
[ENA]
¢þ
>WENV170937774
MDTG01297786
[MDTG] marine metagenome; seawater
32931
33004
+
Gly
TCC
[ENA]
¢þ
>C181081668
CP023454
Alphaproteobacteria
Rhodobacteraceae bacterium QY30 [CP023454]
2526823
2526750
-
Gly
TCC
-
¡û
>C181169783
CP028918
Alphaproteobacteria
Gemmobacter aquarius HYN0069 [CP028918]
2649703
2649630
-
Gly
TCC
-
¡û
>C181187972
CP030099
Alphaproteobacteria
Roseovarius sp. AK1035 [CP030099]
2380397
2380470
+
Gly
TCC
-
¡û
>C181194155
CP030918
Alphaproteobacteria
Paracoccus suum SC2-6 [CP030918]
207563
207636
+
Gly
TCC
-
¡û
>W141818739
JQLS01000008
Alphaproteobacteria
Roseovarius sp. MCTG156(2b) [JQLS]
2148686
2148613
-
Gly
TCC
[ENA]
¡û
>W1910442781
FWFN01000001
Alphaproteobacteria
Pseudooceanicola marinus CECT 7751 [FWFN]
219845
219918
+
Gly
TCC
[ENA]
¡û
>W1910443096
FWFU01000001
Alphaproteobacteria
Roseovarius halotolerans CECT 8110 [FWFU]
32074
32147
+
Gly
TCC
[ENA]
¡û
>W1910443171
FWFV01000010
Alphaproteobacteria
Palleronia marisminoris CECT 7066 [FWFV]
97748
97821
+
Gly
TCC
[ENA]
¡û
>W1911718081
QQVY01000001
Alphaproteobacteria
Paracoccus sp. JM45 [QQVY]
697183
697256
+
Gly
TCC
[ENA]
¡û
>W1810101774
PGTD01000022
Alphaproteobacteria
Pseudooceanicola antarcticus Ar-45 [PGTD]
137025
137098
+
Gly
TCC
[ENA]
¡û
>W1810195555
PKRQ01000003
Alphaproteobacteria
Tabrizicola sp. TH137 [PKRQ]
478281
478208
-
Gly
TCC
[ENA]
¡û
>W1810365077
PVTT01000001
Alphaproteobacteria
Hasllibacter halocynthiae DSM 29318 [PVTT]
1191456
1191383
-
Gly
TCC
[ENA]
¡û
>W1810426273
PYWA01000009
Alphaproteobacteria
Paracoccus indicus IO390502 [PYWA]
54212
54285
+
Gly
TCC
[ENA]
¡û
>W1810471803
QAGK01000011
Alphaproteobacteria
Oceaniglobus ichthyenteri YLY08 [QAGK]
102468
102395
-
Gly
TCC
[ENA]
¡û
>W1810596899
QGGW01000014
Alphaproteobacteria
Roseicyclus mahoneyensis DSM 16097 [QGGW]
120
193
+
Gly
TCC
[ENA]
¡û
>W1810658641
QJJL01000003
Alphaproteobacteria
Loktanella sp. PT4BL [QJJL]
724490
724563
+
Gly
TCC
[ENA]
¡û
>W1810667409
QJPK01000001
Alphaproteobacteria
Paracoccus sediminilitoris DSL-16 [QJPK]
704324
704397
+
Gly
TCC
[ENA]
¡û
>W1810694727
QLMG01000001
Alphaproteobacteria
Salipiger aestuarii DSM 22011 [QLMG]
212489
212416
-
Gly
TCC
[ENA]
¡û
>W1810707360
QNHG01000001
Alphaproteobacteria
Pseudogemmobacter bohemicus Cd-10 [QNHG]
75877
75950
+
Gly
TCC
[ENA]
¡û
>C151073513
CP010855
Alphaproteobacteria
Marinovum algicola DG 898 [CP010855]
2697451
2697378
-
Gly
TCC
[Ensembl]
¡û
>SRA1051699
SRR035098.61196
454 Sequencing (SRP001819)
334
407
+
Gly
TCC
[SRA]
>SRA1053099
SRR035098.337125
454 Sequencing (SRP001819)
79
152
+
Gly
TCC
[SRA]
>W1511564684
LADY01000020
Alphaproteobacteria
Roseovarius sp. BRH_c41 [LADY]
60376
60303
-
Gly
TCC
[ENA]
¡û
>W1511564710
LADY01000064
Alphaproteobacteria
Roseovarius sp. BRH_c41 [LADY]
267714
267787
+
Gly
TCC
[ENA]
¡û
>W1610014789
AONH01000016
Alphaproteobacteria
Roseovarius mucosus DSM 17069 [AONH]
92001
92074
+
Gly
TCC
[ENA]
¡û
>W1610092905
CYSE01000001
Alphaproteobacteria
Tropicibacter naphthalenivorans [CYSE]
296721
296648
-
Gly
TCC
[ENA]
¡û
>WENV071353
AACY023844009
Marine microbial communities from Global Ocean Sampling (GOS)
362
437
+
Gly
TCC
[ENA]
>W1610628542
LIGP01000007
Alphaproteobacteria
Loktanella sp. 1ANDIMAR09 [LIGP]
49382
49455
+
Gly
TCC
[ENA]
¡û
>W1610661262
LJSY01000013
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO18 [LJSY]
68850
68777
-
Gly
TCC
[ENA]
¡û
>W1710011680
AONH01000016
Alphaproteobacteria
Roseovarius mucosus DSM 17069 [AONH]
92001
92074
+
Gly
TCC
[ENA]
¡û
>W1710096160
CYSE01000001
Alphaproteobacteria
Tropicibacter naphthalenivorans [CYSE]
296721
296648
-
Gly
TCC
[ENA]
¡û
>W1710513019
FMZV01000015
Alphaproteobacteria
Ruegeria marina [FMZV]
137392
137319
-
Gly
TCC
[ENA]
¡û
>W1710535254
FNSK01000001
Alphaproteobacteria
Rhodobacter sp. 24-YEA-8 [FNSK]
2312539
2312466
-
Gly
TCC
[ENA]
¡û
>W1710546398
FOCE01000007
Alphaproteobacteria
Gemmobacter aquatilis [FOCE]
110324
110397
+
Gly
TCC
[ENA]
¡û
>W1710562826
FOPF01000011
Alphaproteobacteria
Palleronia marisminoris [FOPF]
97902
97975
+
Gly
TCC
[ENA]
¡û
>W1710568467
FOTQ01000002
Alphaproteobacteria
Shimia aestuarii [FOTQ]
354186
354113
-
Gly
TCC
[ENA]
¡û
>W1710591920
FRCB01000014
Alphaproteobacteria
Roseovarius litoreus [FRCB]
7813
7740
-
Gly
TCC
[ENA]
¡û
>W1710600106
FTPR01000001
Alphaproteobacteria
Yoonia rosea [FTPR]
1438932
1438859
-
Gly
TCC
[ENA]
¡û
>W1710626807
JPKW01000001
Alphaproteobacteria
Paracoccus sp. SM22M-07 [JPKW]
497065
497138
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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