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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413661 (67 seq.)
>W1710906837
LNOH01000021
Bacteroidota
Elizabethkingia meningoseptica [LNOH]
585597
585526
-
Cys
GCA
[ENA]
¡û
>W131188328
ASAN01000011
Bacteroidota
Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 [ASAN]
30660
30731
+
Cys
GCA
[ENA]
¡û
>W1711300444
MAGZ01000004
Bacteroidota
Elizabethkingia meningoseptica [MAGZ]
176336
176407
+
Cys
GCA
[ENA]
¡û
>W1711300571
MAHC01000010
Bacteroidota
Elizabethkingia meningoseptica [MAHC]
121667
121596
-
Cys
GCA
[ENA]
¡û
>W1711300672
MAHE01000015
Bacteroidota
Elizabethkingia meningoseptica [MAHE]
181385
181458
+
Cys
GCA
[ENA]
¡û
>W1711300707
MAHF01000010
Bacteroidota
Elizabethkingia meningoseptica [MAHF]
181331
181402
+
Cys
GCA
[ENA]
¡û
>W1711300831
MAHI01000007
Bacteroidota
Elizabethkingia meningoseptica [MAHI]
316338
316265
-
Cys
GCA
[ENA]
¡û
>W1711301485
MAHX01000015
Bacteroidota
Elizabethkingia occulta G4070 [MAHX]
172032
172103
+
Cys
GCA
[ENA]
¡û
>W1711301570
MAHZ01000016
Bacteroidota
Elizabethkingia meningoseptica [MAHZ]
180338
180409
+
Cys
GCA
[ENA]
¡û
>W1711301609
MAIA01000011
Bacteroidota
Elizabethkingia meningoseptica [MAIA]
388411
388338
-
Cys
GCA
[ENA]
¡û
>W131227779
AUFK01000020
Bacteroidota
Epilithonimonas caeni DSM 17710 [AUFK]
49351
49422
+
Cys
GCA
[ENA]
¡û
>W1711324483
MBDR01000013
Bacteroidota
Elizabethkingia occulta F8124 [MBDR]
77763
77692
-
Cys
GCA
[ENA]
¡û
>W1711344630
MCJH01000005
Bacteroidota
Elizabethkingia meningoseptica [MCJH]
183197
183268
+
Cys
GCA
[ENA]
¡û
>W131235305
AULL01000020
Bacteroidota
Kaistella palustris DSM 21579 [AULL]
9262
9335
+
Cys
GCA
[ENA]
¡û
>W1711373062
MDTY01000006
Bacteroidota
Elizabethkingia meningoseptica [MDTY]
183197
183268
+
Cys
GCA
[ENA]
¡û
>W1711373104
MDTZ01000008
Bacteroidota
Elizabethkingia meningoseptica [MDTZ]
374430
374357
-
Cys
GCA
[ENA]
¡û
>W131241094
BARD01000015
Bacteroidota
Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 [BARD]
30036
30107
+
Cys
GCA
[ENA]
¡û
>W1711505102
MKVE01000017
Bacteroidota
Chryseobacterium sp. 36-9 Sep-36 [MKVE]
199565
199636
+
Cys
GCA
[ENA]
¡û
>W1712082021
NHOS01000002
Bacteroidota
Flavobacteriaceae bacterium JJC [NHOS]
134201
134274
+
Cys
GCA
[ENA]
¡û
>C171048235
CP016376
Bacteroidota
Elizabethkingia meningoseptica G4076 [CP016376]
301374
301303
-
Cys
GCA
-
¡û
>C171048334
CP016378
Bacteroidota
Elizabethkingia meningoseptica G4120 [CP016378]
740027
739954
-
Cys
GCA
-
¡û
>W141007821
AGYB01000006
Bacteroidota
Bergeyella zoohelcum CCUG 30536 [AGYB]
580005
579932
-
Cys
GCA
[ENA]
¡û
>W141291534
JASZ01000015
Bacteroidota
Kaistella haifensis DSM 19056 [JASZ]
9800
9873
+
Cys
GCA
[ENA]
¡û
>WENV183738149
PJUD01092193
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
529
458
-
Cys
GCA
[ENA]
¢þ
>WENV183738480
PJUE01000005
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
73966
74037
+
Cys
GCA
[ENA]
¢þ
>WENV183740491
PJUF01002693
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
6200
6129
-
Cys
GCA
[ENA]
¢þ
>WENV170009844
APMI01003841
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2230
2301
+
Cys
GCA
[ENA]
¢þ
>WENV170009913
APMI01004895
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2230
2301
+
Cys
GCA
[ENA]
¢þ
>C181016519
CP014338
Bacteroidota
Elizabethkingia meningoseptica KC1913 [CP014338]
301374
301303
-
Cys
GCA
-
¡û
>C181074431
CP022986
Bacteroidota
Chryseobacterium camelliae Dolsongi-HT1 [CP022986]
1961085
1961156
+
Cys
GCA
-
¡û
>C181209483
LS483376
Bacteroidota
Elizabethkingia meningoseptica NCTC10016 [LS483376]
2313778
2313849
+
Cys
GCA
-
¡û
>C191025418
CP023540
Bacteroidota
Chryseobacterium sp. 6424 [CP023540]
2175006
2174935
-
Cys
GCA
-
¡û
>C191116457
CP033933
Bacteroidota
Kaistella haifensis G0079 [CP033933]
1230496
1230569
+
Cys
GCA
-
¡û
>C191120440
CP034158
Bacteroidota
Kaistella daneshvariae H3001 [CP034158]
625786
625713
-
Cys
GCA
-
¡û
>C191120467
CP034159
Bacteroidota
Kaistella carnis G0081 [CP034159]
2854179
2854250
+
Cys
GCA
-
¡û
>C191120520
CP034160
Bacteroidota
Epilithonimonas vandammei H6466 [CP034160]
2958855
2958784
-
Cys
GCA
-
¡û
>C191120579
CP034161
Bacteroidota
Epilithonimonas vandammei F5649 [CP034161]
1095123
1095052
-
Cys
GCA
-
¡û
>C191156070
CP037954
Bacteroidota
Chryseobacterium salivictor NBC 122 [CP037954]
1577950
1577879
-
Cys
GCA
-
¡û
>C191181570
CP040694
Bacteroidota
Elizabethkingia sp. JS20170427COW [CP040694]
724690
724617
-
Cys
GCA
-
¡û
>C191211139
LR134441
Bacteroidota
Kaistella antarctica NCTC13489 [LR134441]
1793023
1793094
+
Cys
GCA
-
¡û
>C191212992
LR134503
Bacteroidota
Kaistella jeonii NCTC13459 [LR134503]
2740916
2740845
-
Cys
GCA
-
¡û
>C191219149
LR215974
Bacteroidota
Chryseobacterium taihuense 3012STDY6944375 [LR215974]
3481506
3481435
-
Cys
GCA
-
¡û
>W141802062
JPEP01000002
Bacteroidota
Kaistella antarctica antarcticum [JPEP]
1140058
1139987
-
Cys
GCA
[ENA]
¡û
>W1910285387
FRFB01000003
Bacteroidota
Elizabethkingia meningoseptica [FRFB]
230011
229940
-
Cys
GCA
[ENA]
¡û
>C09106203
CP001673
Bacteroidota
Flavobacteriaceae bacterium 3519-10 [CP001673]
290186
290259
+
Cys
GCA
[Ensembl]
¡û
>W1910341242
FTPF01000004
Bacteroidota
Elizabethkingia meningoseptica [FTPF]
180924
180995
+
Cys
GCA
[ENA]
¡û
>W1910342509
FTRA01000001
Bacteroidota
Elizabethkingia meningoseptica 58-80 [FTRA]
182355
182426
+
Cys
GCA
[ENA]
¡û
>W1910808716
MUGO01000025
Bacteroidota
Chryseobacterium piscicola DSM 21068 [MUGO]
24747
24818
+
Cys
GCA
[ENA]
¡û
>W1910933656
NIUY01000001
Bacteroidota
Chryseobacterium sp. VAUSW3 [NIUY]
453835
453762
-
Cys
GCA
[ENA]
¡û
>W1911701332
QNUG01000019
Bacteroidota
Epilithonimonas hispanica KCTC 22104 [QNUG]
55718
55789
+
Cys
GCA
[ENA]
¡û
>W1911708515
QOVY01000004
Bacteroidota
Chryseobacterium sp. SC28 [QOVY]
32932
32861
-
Cys
GCA
[ENA]
¡û
>W1511390850
JSYK01000003
Bacteroidota
Kaistella solincola DSM 22468 [JSYK]
89470
89543
+
Cys
GCA
[ENA]
¡û
>W1511390893
JSYL01000007
Bacteroidota
Kaistella jeonii DSM 17048 [JSYL]
189344
189417
+
Cys
GCA
[ENA]
¡û
>W1511685220
LFNE01000015
Bacteroidota
Chryseobacterium sp. FH2 [LFNE]
91263
91336
+
Cys
GCA
[ENA]
¡û
>W1610095104
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
356361
356434
+
Cys
GCA
[ENA]
¡û
>W1610507443
FLSV01000006
Bacteroidota
Elizabethkingia meningoseptica [FLSV]
180170
180241
+
Cys
GCA
[ENA]
¡û
>W1610765851
LNOH01000021
Bacteroidota
Elizabethkingia meningoseptica [LNOH]
585597
585526
-
Cys
GCA
[ENA]
¡û
>W1710097899
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
356361
356434
+
Cys
GCA
[ENA]
¡û
>W1710499661
FLSV01000006
Bacteroidota
Elizabethkingia meningoseptica [FLSV]
180170
180241
+
Cys
GCA
[ENA]
¡û
>W1710514872
FNBH01000001
Bacteroidota
Epilithonimonas hungarica hungaricum [FNBH]
558757
558830
+
Cys
GCA
[ENA]
¡û
>W1710522366
FNHD01000004
Bacteroidota
Chryseobacterium taihuense [FNHD]
114923
114850
-
Cys
GCA
[ENA]
¡û
>W1710540574
FNWX01000039
Bacteroidota
Epilithonimonas hominis [FNWX]
7601
7530
-
Cys
GCA
[ENA]
¡û
>W1710554959
FOIX01000004
Bacteroidota
Kaistella antarctica antarcticum [FOIX]
436011
436082
+
Cys
GCA
[ENA]
¡û
>W1710557454
FOLA01000009
Bacteroidota
Kaistella jeonii [FOLA]
74385
74458
+
Cys
GCA
[ENA]
¡û
>W1710565960
FORQ01000004
Bacteroidota
Kaistella treverensis treverense [FORQ]
88984
89057
+
Cys
GCA
[ENA]
¡û
>W1710598906
FTOI01000001
Bacteroidota
Kaistella chaponensis chaponense [FTOI]
129763
129692
-
Cys
GCA
[ENA]
¡û
>W1710598950
FTOJ01000005
Bacteroidota
Chryseobacterium piscicola [FTOJ]
24823
24896
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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