This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413953 (103 seq.)
>W1710926770
LOEL01000056
Bacteroidota
Porphyromonas gingivalis [LOEL]
32121
32050
-
Cys
GCA
[ENA]
¡û
>W131111426
APMB01000065
Bacteroidota
Porphyromonas gingivalis JCVI SC001 [APMB]
146
217
+
Cys
GCA
[ENA]
¡û
>W1711107548
LTSX01000099
Bacteroidota
Porphyromonas sp. HMSC077F02 [LTSX]
11162
11235
+
Cys
GCA
[ENA]
¡û
>W131175802
ARJN01000052
Bacteroidota
Porphyromonas gulae DSM 15663 [ARJN]
7480
7409
-
Cys
GCA
[ENA]
¡û
>W1712084883
NHRU01000010
Bacteroidota
Porphyromonas gingivalis [NHRU]
46264
46193
-
Cys
GCA
[ENA]
¡û
>C016375
AE015924
Bacteroidota
Porphyromonas gingivalis W83 [AE015924]
2334812
2334742
-
Cys
GCA
[Ensembl]
¡û
>WENV180003997
FLRQ01002944
[FLRQ] metagenome; saliva
220
291
+
Cys
GCA
[ENA]
¢þ
>WENV180004219
FLRR01016106
[FLRR] metagenome; saliva
67
138
+
Cys
GCA
[ENA]
¢þ
>WENV180006004
FLRX01083946
[FLRX] metagenome; saliva
79
8
-
Cys
GCA
[ENA]
¢þ
>WENV180006416
FLRY01039625
[FLRY] metagenome; saliva
138
209
+
Cys
GCA
[ENA]
¢þ
>WENV180006921
FLRZ01026509
[FLRZ] metagenome; saliva
128
199
+
Cys
GCA
[ENA]
¢þ
>WENV180009709
FLSC01054565
[FLSC] metagenome; saliva
61
132
+
Cys
GCA
[ENA]
¢þ
>WENV180010770
FLSD01126147
[FLSD] metagenome; saliva
79
8
-
Cys
GCA
[ENA]
¢þ
>WENV180010972
FLSI01045138
[FLSI] metagenome; saliva
399
328
-
Cys
GCA
[ENA]
¢þ
>WENV180402514
OBRP01003685
[OBRP] human gut metagenome; ENVO:feces
159
232
+
Cys
GCA
[ENA]
¢þ
>WENV180525967
OCHI01003281
[OCHI] human gut metagenome; human gut
6377
6450
+
Cys
GCA
[ENA]
¢þ
>WENV180731442
ODGW01000624
[ODGW] human metagenome; G_DNA_Supragingival plaque
10197
10126
-
Cys
GCA
[ENA]
¢þ
>W141074454
ASYL01000125
Bacteroidota
Porphyromonas gingivalis SJD2 [ASYL]
690
761
+
Cys
GCA
[ENA]
¡û
>WENV181427441
OGCQ01094673
[OGCQ] human gut metagenome; human gut
594
521
-
Cys
GCA
[ENA]
¢þ
>W141145653
AWUU01000175
Bacteroidota
Porphyromonas gingivalis F0568 [AWUU]
15481
15552
+
Cys
GCA
[ENA]
¡û
>W141145695
AWUV01000172
Bacteroidota
Porphyromonas gingivalis F0569 [AWUV]
129
200
+
Cys
GCA
[ENA]
¡û
>W141145729
AWUW01000119
Bacteroidota
Porphyromonas gingivalis F0570 [AWUW]
121
192
+
Cys
GCA
[ENA]
¡û
>W141145962
AWVC01000103
Bacteroidota
Porphyromonas gingivalis F0185 [AWVC]
10126
10055
-
Cys
GCA
[ENA]
¡û
>W141145980
AWVD01000052
Bacteroidota
Porphyromonas gingivalis F0566 [AWVD]
15322
15251
-
Cys
GCA
[ENA]
¡û
>W141146049
AWVE01000094
Bacteroidota
Porphyromonas gingivalis W4087 [AWVE]
310
381
+
Cys
GCA
[ENA]
¡û
>WENV182005298
OHBE01003333
[OHBE] human gut metagenome; faeces
10180
10109
-
Cys
GCA
[ENA]
¢þ
>WENV182017445
OHBW01000049
[OHBW] human gut metagenome; feces
38641
38568
-
Cys
GCA
[ENA]
¢þ
>WENV182180295
OHNO01000350
[OHNO] human gut metagenome; feces
10932
11005
+
Cys
GCA
[ENA]
¢þ
>WENV182182196
OHNQ01004891
[OHNQ] human gut metagenome; feces
542
613
+
Cys
GCA
[ENA]
¢þ
>WENV182432622
OIIP01000079
[OIIP] human gut metagenome; human gut
26740
26811
+
Cys
GCA
[ENA]
¢þ
>C08007289
AP009380
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [AP009380]
2346202
2346131
-
Cys
GCA
[Ensembl]
¡û
>WENV183179353
OLPH01003110
[OLPH] human gut metagenome; faeces
11524
11453
-
Cys
GCA
[ENA]
¢þ
>WENV183206958
OLQA01004520
[OLQA] human gut metagenome; faeces
273
346
+
Cys
GCA
[ENA]
¢þ
>WENV183238614
OLQZ01001890
[OLQZ] human gut metagenome; faeces
78
5
-
Cys
GCA
[ENA]
¢þ
>WENV183507900
OMGZ01000141
[OMGZ] human oral metagenome; human oral
220
291
+
Cys
GCA
[ENA]
¢þ
>WENV183510949
OMHT01005034
[OMHT] human oral metagenome; human oral
478
407
-
Cys
GCA
[ENA]
¢þ
>C181102080
CP024591
Bacteroidota
Porphyromonas gingivalis KCOM 2802 [CP024591]
1320879
1320950
+
Cys
GCA
-
¡û
>C181102140
CP024592
Bacteroidota
Porphyromonas gingivalis KCOM 2803 [CP024592]
2312711
2312782
+
Cys
GCA
-
¡û
>C181102194
CP024593
Bacteroidota
Porphyromonas gingivalis KCOM 2804 [CP024593]
1176232
1176161
-
Cys
GCA
-
¡û
>C181102255
CP024594
Bacteroidota
Porphyromonas gingivalis KCOM 2805 [CP024594]
93821
93750
-
Cys
GCA
-
¡û
>C181102283
CP024595
Bacteroidota
Porphyromonas gingivalis KCOM 3001 [CP024595]
2113740
2113811
+
Cys
GCA
-
¡û
>C181102343
CP024596
Bacteroidota
Porphyromonas gingivalis KCOM 3131 [CP024596]
1100886
1100815
-
Cys
GCA
-
¡û
>C181102391
CP024597
Bacteroidota
Porphyromonas gingivalis KCOM 2796 [CP024597]
919370
919299
-
Cys
GCA
-
¡û
>C181102418
CP024598
Bacteroidota
Porphyromonas gingivalis KCOM 2798 [CP024598]
985166
985237
+
Cys
GCA
-
¡û
>C181102471
CP024599
Bacteroidota
Porphyromonas gingivalis KCOM 2800 [CP024599]
1096686
1096757
+
Cys
GCA
-
¡û
>C181102509
CP024600
Bacteroidota
Porphyromonas gingivalis KCOM 2801 [CP024600]
172187
172258
+
Cys
GCA
-
¡û
>C181102582
CP024601
Bacteroidota
Porphyromonas gingivalis KCOM 2799 [CP024601]
1643599
1643528
-
Cys
GCA
-
¡û
>C181123593
CP025930
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [CP025930]
2371190
2371119
-
Cys
GCA
-
¡û
>C181123645
CP025931
Bacteroidota
Porphyromonas gingivalis TDC 60 [CP025931]
2326152
2326081
-
Cys
GCA
-
¡û
>C181123697
CP025932
Bacteroidota
Porphyromonas gingivalis W83 [CP025932]
2335335
2335264
-
Cys
GCA
-
¡û
>W09128351
ACLR01000226
Bacteroidota
Porphyromonas uenonis Mar-60 [ACLR]
18476
18405
-
Cys
GCA
[ENA]
¡û
>W1910371011
FUFB01000014
Bacteroidota
Porphyromonas gingivalis 3_3 [FUFB]
45333
45262
-
Cys
GCA
[ENA]
¡û
>W1910371043
FUFC01000001
Bacteroidota
Porphyromonas gingivalis 3A1 [FUFC]
519
590
+
Cys
GCA
[ENA]
¡û
>W1910371089
FUFD01000011
Bacteroidota
Porphyromonas gingivalis 7BTORR [FUFD]
41487
41558
+
Cys
GCA
[ENA]
¡û
>W1910371168
FUFE01000089
Bacteroidota
Porphyromonas gingivalis 11A [FUFE]
24532
24461
-
Cys
GCA
[ENA]
¡û
>W1910371205
FUFF01000018
Bacteroidota
Porphyromonas gingivalis A7A1_28 [FUFF]
45199
45128
-
Cys
GCA
[ENA]
¡û
>W1910371241
FUFG01000035
Bacteroidota
Porphyromonas gingivalis 84_3 [FUFG]
42637
42708
+
Cys
GCA
[ENA]
¡û
>W1910371294
FUFH01000070
Bacteroidota
Porphyromonas gingivalis ATCC 49417 [FUFH]
32770
32699
-
Cys
GCA
[ENA]
¡û
>W1910371306
FUFI01000005
Bacteroidota
Porphyromonas gingivalis SU60 [FUFI]
32813
32742
-
Cys
GCA
[ENA]
¡û
>W1910371354
FUFJ01000028
Bacteroidota
Porphyromonas gingivalis AFR5B1 [FUFJ]
583
654
+
Cys
GCA
[ENA]
¡û
>W1910372583
FUGF01000058
Bacteroidota
Porphyromonas gingivalis 15_9 [FUGF]
65116
65187
+
Cys
GCA
[ENA]
¡û
>W1910372627
FUGG01000051
Bacteroidota
Porphyromonas gingivalis 13_1 [FUGG]
58357
58428
+
Cys
GCA
[ENA]
¡û
>W1911247371
NSLL01000010
Bacteroidota
Porphyromonas gingivalis WW5127 [NSLL]
32357
32286
-
Cys
GCA
[ENA]
¡û
>W1911247414
NSLM01000007
Bacteroidota
Porphyromonas gingivalis WW5019 [NSLM]
41576
41647
+
Cys
GCA
[ENA]
¡û
>W1911247453
NSLN01000013
Bacteroidota
Porphyromonas gingivalis WW3039 [NSLN]
14040
13969
-
Cys
GCA
[ENA]
¡û
>W1911247506
NSLO01000016
Bacteroidota
Porphyromonas gingivalis WW3102 [NSLO]
45247
45176
-
Cys
GCA
[ENA]
¡û
>W1911247532
NSLP01000002
Bacteroidota
Porphyromonas gingivalis WW3040 [NSLP]
45226
45155
-
Cys
GCA
[ENA]
¡û
>W1911247576
NSLQ01000004
Bacteroidota
Porphyromonas gingivalis WW2952 [NSLQ]
41575
41646
+
Cys
GCA
[ENA]
¡û
>W1911247651
NSLR01000052
Bacteroidota
Porphyromonas gingivalis WW2931 [NSLR]
10755
10684
-
Cys
GCA
[ENA]
¡û
>W1911247675
NSLS01000008
Bacteroidota
Porphyromonas gingivalis WW2903 [NSLS]
43115
43186
+
Cys
GCA
[ENA]
¡û
>W1911247705
NSLT01000002
Bacteroidota
Porphyromonas gingivalis WW2885 [NSLT]
43913
43984
+
Cys
GCA
[ENA]
¡û
>W1911247746
NSLU01000012
Bacteroidota
Porphyromonas gingivalis WW2881 [NSLU]
32602
32531
-
Cys
GCA
[ENA]
¡û
>W1911247809
NSLV01000019
Bacteroidota
Porphyromonas gingivalis WW2866 [NSLV]
32700
32629
-
Cys
GCA
[ENA]
¡û
>W1911247856
NSLW01000009
Bacteroidota
Porphyromonas gingivalis WW2842 [NSLW]
46161
46090
-
Cys
GCA
[ENA]
¡û
>W1911247876
NSLX01000002
Bacteroidota
Porphyromonas gingivalis WW2096 [NSLX]
115053
115124
+
Cys
GCA
[ENA]
¡û
>W1911709124
QPGS01000018
Bacteroidota
Porphyromonas gingivalis 381OKJP [QPGS]
32443
32372
-
Cys
GCA
[ENA]
¡û
>W1810573722
QEKY01000006
Bacteroidota
Porphyromonas loveana DSM 28520 [QEKY]
47614
47543
-
Cys
GCA
[ENA]
¡û
>C151089045
CP011995
Bacteroidota
Porphyromonas gingivalis A7436 [CP011995]
2358365
2358294
-
Cys
GCA
-
¡û
>C151089093
CP011996
Bacteroidota
Porphyromonas gingivalis AJW4 [CP011996]
2363830
2363759
-
Cys
GCA
-
¡û
>C11117311
AP012203
Bacteroidota
Porphyromonas gingivalis TDC60 [AP012203]
2331170
2331099
-
Cys
GCA
[Ensembl]
¡û
>W1511328374
JQJE01000033
Bacteroidota
Porphyromonas gulae OH3161B [JQJE]
53916
53845
-
Cys
GCA
[ENA]
¡û
>W1511336110
JQZY01000002
Bacteroidota
Porphyromonas sp. COT-052 OH4946 [JQZY]
100589
100660
+
Cys
GCA
[ENA]
¡û
>W1511336379
JRAE01000086
Bacteroidota
Porphyromonas gulae COT-052_OH2199 [JRAE]
93540
93469
-
Cys
GCA
[ENA]
¡û
>W1511336425
JRAF01000064
Bacteroidota
Porphyromonas gulae COT-052 OH3498 [JRAF]
7320
7249
-
Cys
GCA
[ENA]
¡û
>W1511336466
JRAG01000036
Bacteroidota
Porphyromonas gulae COT-052 OH1355 [JRAG]
131884
131955
+
Cys
GCA
[ENA]
¡û
>W1511336521
JRAI01000004
Bacteroidota
Porphyromonas gulae COT-052 OH1451 [JRAI]
12788
12859
+
Cys
GCA
[ENA]
¡û
>W1511336562
JRAJ01000001
Bacteroidota
Porphyromonas gulae COT-052 OH2179 [JRAJ]
33286
33357
+
Cys
GCA
[ENA]
¡û
>W1511336610
JRAK01000050
Bacteroidota
Porphyromonas gulae COT-052 OH3439 [JRAK]
65058
64987
-
Cys
GCA
[ENA]
¡û
>W1511336647
JRAL01000003
Bacteroidota
Porphyromonas gulae COT-052 OH4119 [JRAL]
61177
61248
+
Cys
GCA
[ENA]
¡û
>W1511336824
JRAQ01000016
Bacteroidota
Porphyromonas gulae COT-052 OH3471 [JRAQ]
7219
7148
-
Cys
GCA
[ENA]
¡û
>W1511336957
JRAT01000022
Bacteroidota
Porphyromonas gulae COT-052 OH3856 [JRAT]
7302
7231
-
Cys
GCA
[ENA]
¡û
>W1511343938
JRFD01000036
Bacteroidota
Porphyromonas gulae COT-052 OH2857 [JRFD]
94700
94771
+
Cys
GCA
[ENA]
¡û
>C161018166
CP007756
Bacteroidota
Porphyromonas gingivalis HG66 [CP007756]
484376
484305
-
Cys
GCA
[Ensembl]
¡û
>C161046934
CP012889
Bacteroidota
Porphyromonas gingivalis 381 [CP012889]
2370188
2370117
-
Cys
GCA
-
¡û
>C161051781
CP013131
Bacteroidota
Porphyromonas gingivalis A7A1-28 [CP013131]
2240298
2240227
-
Cys
GCA
-
¡û
>W121073556
AJZS01000053
Bacteroidota
Porphyromonas gingivalis W50 [AJZS]
496
567
+
Cys
GCA
[ENA]
¡û
>W1610060542
BCBV01000064
Bacteroidota
Porphyromonas gingivalis [BCBV]
10292
10221
-
Cys
GCA
[ENA]
¡û
>W1610784263
LOEL01000056
Bacteroidota
Porphyromonas gingivalis [LOEL]
32121
32050
-
Cys
GCA
[ENA]
¡û
>W1710017902
ASYM01000118
Bacteroidota
Porphyromonas gingivalis SJD4 [ASYM]
10151
10080
-
Cys
GCA
[ENA]
¡û
>W1710017946
ASYN01000174
Bacteroidota
Porphyromonas gingivalis SJD5 [ASYN]
10172
10101
-
Cys
GCA
[ENA]
¡û
>W1710017977
ASYO01000084
Bacteroidota
Porphyromonas gingivalis SJD11 [ASYO]
10889
10818
-
Cys
GCA
[ENA]
¡û
>W1710018028
ASYP01000127
Bacteroidota
Porphyromonas gingivalis SJD12 [ASYP]
45183
45112
-
Cys
GCA
[ENA]
¡û
>W1710057797
BCBV01000064
Bacteroidota
Porphyromonas gingivalis [BCBV]
10292
10221
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK