This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.41425 (16 seq.)
>W1710940153
LONZ01000024
Gammaproteobacteria
Escherichia coli [LONZ]
43732
43820
+
Ser
CGA
[ENA]
¡û
>C171018139
CP012597
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Newport 0112-791 [CP012597]
3758636
3758724
+
Ser
CGA
-
¡û
>W08011923
CAAV01003558
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhi str. E98-2068 [CAAV]
2868
2783
-
Ser
CGA
[ENA]
¡û
>WENV182395119
OIEK01000600
[OIEK] human gut metagenome; human gut
2000
1912
-
Ser
CGA
[ENA]
¢þ
>C181118306
CP025515
Gammaproteobacteria
Klebsiella pneumoniae 002SK2 [CP025515]
3510041
3509953
-
Ser
CGA
-
¡û
>C181198661
CP031282
Gammaproteobacteria
Escherichia fergusonii 40A [CP031282]
1068092
1068180
+
Ser
CGA
-
¡û
>C181215506
LS483469
Gammaproteobacteria
Serratia plymuthica NCTC12961 [LS483469]
3357423
3357334
-
Ser
CGA
-
¡û
>C191109150
CP033683
Gammaproteobacteria
Raoultella ornithinolytica YDC775_2 [CP033683]
3481704
3481616
-
Ser
CGA
-
¡û
>C191197980
LR134158
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Goldcoast NCTC13175 [LR134158]
1872678
1872766
+
Ser
CGA
-
¡û
>W141815070
JQHM01000001
Gammaproteobacteria
Pectobacterium betavasculorum [JQHM]
476093
476181
+
Ser
CGA
[ENA]
¡û
>W1911019358
NLNS01000065
Gammaproteobacteria
Escherichia coli MOD1-EC5498 [NLNS]
13167
13255
+
Ser
CGA
[ENA]
¡û
>W1911020745
NLOP01000009
Gammaproteobacteria
Escherichia coli MOD1-EC5472 [NLOP]
138649
138737
+
Ser
CGA
[ENA]
¡û
>W1810101163
PGPC01000001
Gammaproteobacteria
Serratia ureilytica DW2 [PGPC]
690401
690312
-
Ser
CGA
[ENA]
¡û
>SRA1004541
SRR006906.63547
metagenomic water samples (SRP000427)
110
22
-
Ser
CGA
[SRA]
>W1610796277
LONZ01000024
Gammaproteobacteria
Escherichia coli [LONZ]
43732
43820
+
Ser
CGA
[ENA]
¡û
>W1730025905
MBQB01000423
Gammaproteobacteria
Klebsiella pneumoniae [MBQB]
6825
6913
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK