This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.415398 (105 seq.)
>W1710793260
LJPB01000114
Gammaproteobacteria
Photorhabdus laumondii subsp. laumondii [LJPB]
12542
12616
+
Gln
CTG
[ENA]
¡û
>W1710932252
LOIC01000077
Gammaproteobacteria
Photorhabdus namnaonensis luminescens [LOIC]
92086
92012
-
Gln
CTG
[ENA]
¡û
>W1710938495
LOMY01000036
Gammaproteobacteria
Photorhabdus australis subsp. australis [LOMY]
52492
52566
+
Gln
CTG
[ENA]
¡û
>W1711017574
LQWI01000100
Gammaproteobacteria
Escherichia coli [LQWI]
1645
1719
+
Gln
CTG
[ENA]
¡û
>W1711128868
LUTP01000023
Gammaproteobacteria
Lonsdalea iberica subsp. iberica [LUTP]
21568
21494
-
Gln
CTG
[ENA]
¡û
>W1711128870
LUTP01000023
Gammaproteobacteria
Lonsdalea iberica subsp. iberica [LUTP]
21364
21290
-
Gln
CTG
[ENA]
¡û
>W1711184794
LWMI01000007
Gammaproteobacteria
Candidatus Arsenophonus triatominarum [LWMI]
265756
265830
+
Gln
CTG
[ENA]
¡û
>W1711327277
MBJU01000065
Gammaproteobacteria
Photorhabdus temperata [MBJU]
65219
65293
+
Gln
CTG
[ENA]
¡û
>W1711487873
MKGR01000001
Gammaproteobacteria
Xenorhabdus thuongxuanensis 30TX1 [MKGR]
294330
294404
+
Gln
CTG
[ENA]
¡û
>W1711738755
MUBJ01000002
Gammaproteobacteria
Xenorhabdus vietnamensis [MUBJ]
394697
394623
-
Gln
CTG
[ENA]
¡û
>W1711853456
MYFJ01000089
Gammaproteobacteria
Photorhabdus luminescens [MYFJ]
47527
47453
-
Gln
CTG
[ENA]
¡û
>W131223506
AUCC01000101
Gammaproteobacteria
Arsenophonus nasoniae DSM 15247 [AUCC]
121
47
-
Gln
CTG
[ENA]
¡û
>WENV180042986
LQAH01000071
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
3799
3725
-
Gln
TTG
[ENA]
¢þ
>W141230064
BASS01000176
Gammaproteobacteria
Sodalis-like symbiont of Philaenus spumarius [BASS]
142
68
-
Gln
CTG
[ENA]
¡û
>W141254037
CBST010000162
Gammaproteobacteria
Xenorhabdus bovienii str. feltiae France [CBST]
18960
19034
+
Gln
CTG
[ENA]
¡û
>W141254094
CBSU010000193
Gammaproteobacteria
Xenorhabdus bovienii str. feltiae Florida [CBSU]
18972
19046
+
Gln
CTG
[ENA]
¡û
>W141254174
CBSV010000257
Gammaproteobacteria
Xenorhabdus bovienii str. feltiae Moldova [CBSV]
61940
61866
-
Gln
CTG
[ENA]
¡û
>W141254244
CBSW010000308
Gammaproteobacteria
Xenorhabdus bovienii str. puntauvense [CBSW]
4429
4355
-
Gln
CTG
[ENA]
¡û
>W141254386
CBSZ010000071
Gammaproteobacteria
Xenorhabdus bovienii str. kraussei Becker Underwood [CBSZ]
2046
1972
-
Gln
CTG
[ENA]
¡û
>W141258407
CBXE010000022
Gammaproteobacteria
Xenorhabdus cabanillasii JM26 [CBXE]
34
108
+
Gln
CTG
[ENA]
¡û
>W141461916
JFGV01000011
Gammaproteobacteria
Photorhabdus aegyptia BA1 [JFGV]
58505
58579
+
Gln
CTG
[ENA]
¡û
>C181015840
CP014137
Gammaproteobacteria
Brenneria goodwinii FRB141 [CP014137]
2758472
2758546
+
Gln
CTG
-
¡û
>C181017207
CP015281
Gammaproteobacteria
Photorhabdus laumondii subsp. laumondii DSPV002N [CP015281]
1524453
1524379
-
Gln
CTG
-
¡û
>C181108090
CP024900
Gammaproteobacteria
Photorhabdus laumondii subsp. laumondii DJC [CP024900]
1434959
1434885
-
Gln
CTG
-
¡û
>C181108167
CP024901
Gammaproteobacteria
Photorhabdus laumondii subsp. laumondii TT01 [CP024901]
1524453
1524379
-
Gln
CTG
-
¡û
>C191088008
CP032329
Gammaproteobacteria
Xenorhabdus nematophila YL001 [CP032329]
682101
682027
-
Gln
CTG
-
¡û
>C191117849
CP034036
Gammaproteobacteria
Brenneria nigrifluens DSM 30175 = ATCC 13028 [CP034036]
3357819
3357893
+
Gln
CTG
-
¡û
>C191161438
CP038613
Gammaproteobacteria
Arsenophonus nasoniae FIN [CP038613]
1089843
1089769
-
Gln
CTG
-
¡û
>W141565250
JIBO01000007
Gammaproteobacteria
Lonsdalea quercina subsp. quercina [JIBO]
9399
9473
+
Gln
CTG
[ENA]
¡û
>W141565252
JIBO01000007
Gammaproteobacteria
Lonsdalea quercina subsp. quercina [JIBO]
9604
9678
+
Gln
CTG
[ENA]
¡û
>W141565320
JIBP01000003
Gammaproteobacteria
Lonsdalea quercina subsp. quercina [JIBP]
410681
410607
-
Gln
CTG
[ENA]
¡û
>W141565322
JIBP01000003
Gammaproteobacteria
Lonsdalea quercina subsp. quercina [JIBP]
410477
410403
-
Gln
CTG
[ENA]
¡û
>W141565386
JIBQ01000003
Gammaproteobacteria
Lonsdalea quercina subsp. quercina [JIBQ]
410700
410626
-
Gln
CTG
[ENA]
¡û
>W141565388
JIBQ01000003
Gammaproteobacteria
Lonsdalea quercina subsp. quercina [JIBQ]
410496
410422
-
Gln
CTG
[ENA]
¡û
>W141779163
JONO01000036
Gammaproteobacteria
Photorhabdus australis subsp. australis DSM 17609 [JONO]
47249
47175
-
Gln
CTG
[ENA]
¡û
>W1910281654
FQXW01000001
Gammaproteobacteria
Nissabacter archeti 2134 [FQXW]
514147
514221
+
Gln
CTG
[ENA]
¡û
>C09108343
FM162591
Gammaproteobacteria
Photorhabdus asymbiotica [FM162591]
3665717
3665791
+
Gln
CTG
[Ensembl]
¡û
>W1910751215
MJLX01000041
Gammaproteobacteria
Brenneria goodwinii FRB141 [MJLX]
25787
25861
+
Gln
CTG
[ENA]
¡û
>W1910751295
MJLY01000044
Gammaproteobacteria
Brenneria goodwinii FRB171 [MJLY]
25911
25985
+
Gln
CTG
[ENA]
¡û
>W1910918759
NIBS01000001
Gammaproteobacteria
Xenorhabdus budapestensis DSM 16342 [NIBS]
406497
406423
-
Gln
CTG
[ENA]
¡û
>W1910918960
NIBU01000045
Gammaproteobacteria
Xenorhabdus innexi DSM 16336 [NIBU]
27901
27975
+
Gln
CTG
[ENA]
¡û
>W1910919044
NIBV01000002
Gammaproteobacteria
Xenorhabdus szentirmaii DSM 16338 [NIBV]
323965
323891
-
Gln
CTG
[ENA]
¡û
>W1910932688
NITY01000018
Gammaproteobacteria
Xenorhabdus mauleonii DSM 17908 [NITY]
63816
63742
-
Gln
CTG
[ENA]
¡û
>W1910932811
NIUA01000001
Gammaproteobacteria
Xenorhabdus szentirmaii US123 [NIUA]
1993478
1993552
+
Gln
CTG
[ENA]
¡û
>W1910939780
NJAH01000011
Gammaproteobacteria
Xenorhabdus sp. KK7.4 [NJAH]
74422
74348
-
Gln
CTG
[ENA]
¡û
>W1910939854
NJAI01000002
Gammaproteobacteria
Xenorhabdus hominickii DSM 17903 [NJAI]
212688
212614
-
Gln
CTG
[ENA]
¡û
>W1910939927
NJAJ01000012
Gammaproteobacteria
Xenorhabdus stockiae DSM 17904 [NJAJ]
52802
52876
+
Gln
CTG
[ENA]
¡û
>W1910940000
NJAK01000001
Gammaproteobacteria
Xenorhabdus ishibashii DSM 22670 [NJAK]
2843987
2843913
-
Gln
CTG
[ENA]
¡û
>W1910941348
NJCW01000026
Gammaproteobacteria
Xenorhabdus sp. KJ12.1 [NJCW]
34386
34460
+
Gln
CTG
[ENA]
¡û
>W1910941403
NJCX01000008
Gammaproteobacteria
Xenorhabdus kozodoii DSM 17907 [NJCX]
159679
159605
-
Gln
CTG
[ENA]
¡û
>W1910941435
NJCX01000023
Gammaproteobacteria
Xenorhabdus kozodoii DSM 17907 [NJCX]
55608
55534
-
Gln
CTG
[ENA]
¡û
>W1910942218
NJGH01000010
Gammaproteobacteria
Xenorhabdus cabanillasii JM26 [NJGH]
56682
56756
+
Gln
CTG
[ENA]
¡û
>W1910993814
NKXM01000089
Gammaproteobacteria
Sodalis-like symbiont of Philaenus spumarius [NKXM]
3056
3130
+
Gln
CTG
[ENA]
¡û
>W1911129049
NORC01000014
Gammaproteobacteria
Escherichia coli MOD1-EC6806 [NORC]
105030
104956
-
Gln
CTG
[ENA]
¡û
>W1911237752
NSCD01000024
Gammaproteobacteria
Photorhabdus sp. S7-51 [NSCD]
46954
46880
-
Gln
CTG
[ENA]
¡û
>W1911237819
NSCE01000020
Gammaproteobacteria
Photorhabdus sp. S14-60 [NSCE]
46954
46880
-
Gln
CTG
[ENA]
¡û
>W1911237876
NSCF01000013
Gammaproteobacteria
Photorhabdus sp. S15-56 [NSCF]
46954
46880
-
Gln
CTG
[ENA]
¡û
>W1911238116
NSCI01000025
Gammaproteobacteria
Photorhabdus laumondii subsp. clarkei BOJ-47 [NSCI]
31496
31570
+
Gln
CTG
[ENA]
¡û
>W1911238249
NSCK01000020
Gammaproteobacteria
Photorhabdus sp. S9-53 [NSCK]
48692
48618
-
Gln
CTG
[ENA]
¡û
>W1911238319
NSCL01000021
Gammaproteobacteria
Photorhabdus sp. S8-52 [NSCL]
48692
48618
-
Gln
CTG
[ENA]
¡û
>W1911238370
NSCM01000009
Gammaproteobacteria
Photorhabdus bodei LJ24-63 [NSCM]
85458
85384
-
Gln
CTG
[ENA]
¡û
>W1911238422
NSCN01000002
Gammaproteobacteria
Photorhabdus sp. HUG-39 [NSCN]
201353
201279
-
Gln
CTG
[ENA]
¡û
>W1911632367
PUJX01000016
Gammaproteobacteria
Photorhabdus luminescens MEX47-22 [PUJX]
94748
94822
+
Gln
CTG
[ENA]
¡û
>W1911632422
PUJY01000010
Gammaproteobacteria
Photorhabdus khanii MEX20-17 [PUJY]
48721
48647
-
Gln
CTG
[ENA]
¡û
>W1911654296
QDKH01000027
Gammaproteobacteria
Brenneria sp. CFCC 11842 [QDKH]
76288
76362
+
Gln
CTG
[ENA]
¡û
>W1810181842
PJZF01000005
Gammaproteobacteria
Chimaeribacter californicus 2015Iso6 [PJZF]
197498
197424
-
Gln
CTG
[ENA]
¡û
>W1810181907
PJZG01000003
Gammaproteobacteria
Chimaeribacter arupi 2016Iso3 2013Iso5 [PJZG]
193761
193687
-
Gln
CTG
[ENA]
¡û
>W1810181979
PJZH01000002
Gammaproteobacteria
Chimaeribacter coloradensis 2016Iso4 [PJZH]
379092
379018
-
Gln
CTG
[ENA]
¡û
>W1810182041
PJZI01000002
Gammaproteobacteria
Chimaeribacter arupi 2016Iso3 [PJZI]
78845
78919
+
Gln
CTG
[ENA]
¡û
>W1810182133
PJZJ01000013
Gammaproteobacteria
Chimaeribacter arupi 2016Iso3 2016Iso2 [PJZJ]
61094
61020
-
Gln
CTG
[ENA]
¡û
>W1810182195
PJZK01000004
Gammaproteobacteria
Chimaeribacter arupi 2016Iso3 2016Iso1 [PJZK]
79074
79148
+
Gln
CTG
[ENA]
¡û
>W1810339394
PUWT01000043
Gammaproteobacteria
Photorhabdus hindustanensis H1 [PUWT]
47278
47204
-
Gln
CTG
[ENA]
¡û
>W1810339456
PUWU01000014
Gammaproteobacteria
Photorhabdus luminescens H3 [PUWU]
60901
60975
+
Gln
CTG
[ENA]
¡û
>W1810339530
PUWV01000034
Gammaproteobacteria
Photorhabdus luminescens H4 [PUWV]
47404
47330
-
Gln
CTG
[ENA]
¡û
>W1810339572
PUWW01000025
Gammaproteobacteria
Photorhabdus luminescens H5 [PUWW]
275
349
+
Gln
CTG
[ENA]
¡û
>W1810339659
PUWX01000040
Gammaproteobacteria
Photorhabdus luminescens H7 [PUWX]
46836
46762
-
Gln
CTG
[ENA]
¡û
>W1810543409
QDKI01000011
Gammaproteobacteria
Brenneria roseae subsp. roseae LMG 27714 [QDKI]
156770
156844
+
Gln
CTG
[ENA]
¡û
>W1810543471
QDKJ01000004
Gammaproteobacteria
Brenneria roseae subsp. americana LMG 27715 [QDKJ]
331729
331803
+
Gln
CTG
[ENA]
¡û
>W1810543519
QDKK01000001
Gammaproteobacteria
Brenneria nigrifluens LMG 2694 [QDKK]
418173
418099
-
Gln
CTG
[ENA]
¡û
>W1810861745
QTUB01000001
Gammaproteobacteria
Xenorhabdus cabanillasii DSM 17905 [QTUB]
4266893
4266967
+
Gln
CTG
[ENA]
¡û
>C151098240
FO704550
Gammaproteobacteria
Xenorhabdus doucetiae FRM16 [FO704550]
1285455
1285381
-
Gln
CTG
[Ensembl]
¡û
>C151098269
FO704551
Gammaproteobacteria
Xenorhabdus poinarii G6 [FO704551]
2353676
2353750
+
Gln
CTG
[Ensembl]
¡û
>C151098350
FO818637
Gammaproteobacteria
Xenorhabdus bovienii CS03 [FO818637]
3392387
3392461
+
Gln
CTG
[Ensembl]
¡û
>C151103968
LN681227
Gammaproteobacteria
Xenorhabdus nematophila AN6/1 [LN681227]
1213538
1213464
-
Gln
CTG
[Ensembl]
¡û
>W1510059527
CCWM01000400
Gammaproteobacteria
Xenorhabdus nematophila str. Anatoliense [CCWM]
12990
12916
-
Gln
CTG
[ENA]
¡û
>W1510059549
CCWM01000469
Gammaproteobacteria
Xenorhabdus nematophila str. Anatoliense [CCWM]
12990
12916
-
Gln
CTG
[ENA]
¡û
>W1510148569
CGIG01000001
Gammaproteobacteria
Brenneria goodwinii OBR1 [CGIG]
136867
136941
+
Gln
CTG
[ENA]
¡û
>C10114335
FN667742
Gammaproteobacteria
Xenorhabdus nematophila ATCC 19061 [FN667742]
1213634
1213560
-
Gln
CTG
[Ensembl]
¡û
>C11116825
FM162591
Gammaproteobacteria
Photorhabdus asymbiotica [FM162591]
3665717
3665791
+
Gln
CTG
[Ensembl]
¡û
>W1511347682
JRJV01000013
Gammaproteobacteria
Xenorhabdus nematophila C2-3 [JRJV]
57725
57651
-
Gln
CTG
[ENA]
¡û
>W1511349391
JRLH01000012
Gammaproteobacteria
Candidatus Arsenophonus nilaparvatae str. Hangzhou of Nilaparvata lugens [JRLH]
45035
44961
-
Gln
CTG
[ENA]
¡û
>W1511401196
JTHJ02000193
Gammaproteobacteria
Photorhabdus luminescens NBAII HiPL101 [JTHJ]
26
100
+
Gln
CTG
[ENA]
¡û
>W1511401233
JTHK01000068
Gammaproteobacteria
Xenorhabdus sp. NBAII XenSa04 [JTHK]
45754
45680
-
Gln
CTG
[ENA]
¡û
>W1511512708
JXUR02000222
Gammaproteobacteria
Photorhabdus luminescens NBAII Hb105 [JXUR]
24937
24863
-
Gln
CTG
[ENA]
¡û
>W1511638084
LDNM01000072
Gammaproteobacteria
Xenorhabdus griffiniae BMMCB [LDNM]
22963
23037
+
Gln
CTG
[ENA]
¡û
>W11176223
AFWW01000010
Gammaproteobacteria
Brenneria sp. EniD312 [AFWW]
2159943
2160017
+
Gln
CTG
[ENA]
¡û
>W1610032522
AZAB02000235
Gammaproteobacteria
Photorhabdus luminescens NBAII H75HRPL105 [AZAB]
25
99
+
Gln
CTG
[ENA]
¡û
>W1610657264
LJPB01000114
Gammaproteobacteria
Photorhabdus laumondii subsp. laumondii [LJPB]
12542
12616
+
Gln
CTG
[ENA]
¡û
>W1610789783
LOIC01000077
Gammaproteobacteria
Photorhabdus namnaonensis luminescens [LOIC]
92086
92012
-
Gln
CTG
[ENA]
¡û
>W1610794619
LOMY01000036
Gammaproteobacteria
Photorhabdus australis subsp. australis [LOMY]
52492
52566
+
Gln
CTG
[ENA]
¡û
>W1610866050
LQWI01000100
Gammaproteobacteria
Escherichia coli [LQWI]
1645
1719
+
Gln
CTG
[ENA]
¡û
>W1610990531
LWMI01000007
Gammaproteobacteria
Candidatus Arsenophonus triatominarum [LWMI]
265756
265830
+
Gln
CTG
[ENA]
¡û
>W1710532925
FNQS01000001
Gammaproteobacteria
Lonsdalea quercina [FNQS]
291920
291994
+
Gln
CTG
[ENA]
¡û
>W1710532927
FNQS01000001
Gammaproteobacteria
Lonsdalea quercina [FNQS]
292125
292199
+
Gln
CTG
[ENA]
¡û
>W1710571001
FOVO01000006
Gammaproteobacteria
Xenorhabdus japonica [FOVO]
93175
93249
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK