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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.416630 (29 seq.)
>W131169177
AREO01000002
Bacillota
Erysipelothrix tonsillarum DSM 14972 [AREO]
121480
121553
+
Gly
GCC
[ENA]
¡û
>W131169179
AREO01000002
Bacillota
Erysipelothrix tonsillarum DSM 14972 [AREO]
121934
122007
+
Gly
GCC
[ENA]
¡û
>W131169181
AREO01000002
Bacillota
Erysipelothrix tonsillarum DSM 14972 [AREO]
122108
122181
+
Gly
GCC
[ENA]
¡û
>C171057439
CP017116
Bacillota
Erysipelothrix rhusiopathiae WH13013 [CP017116]
112216
112289
+
Gly
GCC
-
¡û
>C171057441
CP017116
Bacillota
Erysipelothrix rhusiopathiae WH13013 [CP017116]
112613
112686
+
Gly
GCC
-
¡û
>C171057443
CP017116
Bacillota
Erysipelothrix rhusiopathiae WH13013 [CP017116]
112789
112862
+
Gly
GCC
-
¡û
>WENV180296284
OBJA01000166
[OBJA] soil metagenome; sediment, water from around vicinity
26975
26902
-
Gly
GCC
[ENA]
¢þ
>C181185403
CP029804
Bacillota
Erysipelothrix rhusiopathiae ML101 [CP029804]
1240511
1240584
+
Gly
GCC
-
¡û
>C181185405
CP029804
Bacillota
Erysipelothrix rhusiopathiae ML101 [CP029804]
1240908
1240981
+
Gly
GCC
-
¡û
>C181185407
CP029804
Bacillota
Erysipelothrix rhusiopathiae ML101 [CP029804]
1241084
1241157
+
Gly
GCC
-
¡û
>C191108259
CP033601
Bacillota
Erysipelothrix rhusiopathiae KC-Sb-R1 [CP033601]
608285
608212
-
Gly
GCC
-
¡û
>C191108261
CP033601
Bacillota
Erysipelothrix rhusiopathiae KC-Sb-R1 [CP033601]
607890
607817
-
Gly
GCC
-
¡û
>C191108263
CP033601
Bacillota
Erysipelothrix rhusiopathiae KC-Sb-R1 [CP033601]
607714
607641
-
Gly
GCC
-
¡û
>C191122103
CP034234
Bacillota
Erysipelothrix piscisicarius 15TAL0474 [CP034234]
843669
843596
-
Gly
GCC
-
¡û
>C191211070
LR134439
Bacillota
Erysipelothrix rhusiopathiae NCTC8163 [LR134439]
637153
637080
-
Gly
GCC
-
¡û
>C191211072
LR134439
Bacillota
Erysipelothrix rhusiopathiae NCTC8163 [LR134439]
636756
636683
-
Gly
GCC
-
¡û
>C191211074
LR134439
Bacillota
Erysipelothrix rhusiopathiae NCTC8163 [LR134439]
636580
636507
-
Gly
GCC
-
¡û
>W09128026
ACLK01000029
Bacillota
Erysipelothrix rhusiopathiae ATCC 19414 [ACLK]
102320
102247
-
Gly
GCC
[ENA]
¡û
>W09128028
ACLK01000029
Bacillota
Erysipelothrix rhusiopathiae ATCC 19414 [ACLK]
101923
101850
-
Gly
GCC
[ENA]
¡û
>W09128030
ACLK01000029
Bacillota
Erysipelothrix rhusiopathiae ATCC 19414 [ACLK]
101747
101674
-
Gly
GCC
[ENA]
¡û
>C151007155
CP005079
Bacillota
Erysipelothrix rhusiopathiae SY1027 [CP005079]
740662
740735
+
Gly
GCC
[Ensembl]
¡û
>C151007157
CP005079
Bacillota
Erysipelothrix rhusiopathiae SY1027 [CP005079]
741058
741131
+
Gly
GCC
[Ensembl]
¡û
>C11108865
AP012027
Bacillota
Erysipelothrix rhusiopathiae str. Fujisawa [AP012027]
1251254
1251327
+
Gly
GCC
[Ensembl]
¡û
>C11108867
AP012027
Bacillota
Erysipelothrix rhusiopathiae str. Fujisawa [AP012027]
1251652
1251725
+
Gly
GCC
[Ensembl]
¡û
>C11108869
AP012027
Bacillota
Erysipelothrix rhusiopathiae str. Fujisawa [AP012027]
1251828
1251901
+
Gly
GCC
[Ensembl]
¡û
>C161078663
CP014861
Bacillota
Erysipelothrix rhusiopathiae GXBY-1 [CP014861]
692629
692556
-
Gly
GCC
-
¡û
>C161078665
CP014861
Bacillota
Erysipelothrix rhusiopathiae GXBY-1 [CP014861]
692232
692159
-
Gly
GCC
-
¡û
>C161078667
CP014861
Bacillota
Erysipelothrix rhusiopathiae GXBY-1 [CP014861]
691835
691762
-
Gly
GCC
-
¡û
>C161078669
CP014861
Bacillota
Erysipelothrix rhusiopathiae GXBY-1 [CP014861]
691659
691586
-
Gly
GCC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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