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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.416636 (18 seq.)
>W131213792
ATTH01000001
Rhodothermota
Salisaeta longa DSM 21114 [ATTH]
1957658
1957731
+
Gln
TTG
[ENA]
¡û
>C024138
CP000159
Rhodothermota
Salinibacter ruber DSM 13855 [CP000159]
1038688
1038615
-
Gln
TTG
[Ensembl]
¡û
>WENV180318165
OBKM01000012
[OBKM] metagenome; water
38252
38325
+
Gln
TTG
[ENA]
¢þ
>C181192127
CP030716
Rhodothermota
Salinibacter ruber P13 [CP030716]
1068338
1068265
-
Gln
TTG
-
¡û
>C191072391
CP030356
Rhodothermota
Salinibacter ruber P18 [CP030356]
1031201
1031128
-
Gln
TTG
-
¡û
>C191072435
CP030357
Rhodothermota
Salinibacter ruber SP38 [CP030357]
1040562
1040489
-
Gln
TTG
-
¡û
>C191072481
CP030361
Rhodothermota
Salinibacter ruber SP73 [CP030361]
1152678
1152605
-
Gln
TTG
-
¡û
>C191072525
CP030364
Rhodothermota
Salinibacter ruber M1 [CP030364]
1065579
1065506
-
Gln
TTG
-
¡û
>C191072570
CP030369
Rhodothermota
Salinibacter ruber RM158 [CP030369]
1108359
1108286
-
Gln
TTG
-
¡û
>W1910785946
MQWC01000004
Rhodothermota
Salinibacter sp. 10B [MQWC]
1664614
1664686
+
Gln
TTG
[ENA]
¡û
>W1910870061
NCQX01000062
Rhodothermota
Salinibacter ruber SP273 [NCQX]
16270
16343
+
Gln
TTG
[ENA]
¡û
>W1910870089
NCQY01000017
Rhodothermota
Salinibacter altiplanensis AN15 [NCQY]
15852
15924
+
Gln
TTG
[ENA]
¡û
>W1910870134
NCQZ01000027
Rhodothermota
Salinibacter altiplanensis LL19 [NCQZ]
114336
114264
-
Gln
TTG
[ENA]
¡û
>W1910870202
NCRA01000053
Rhodothermota
Salinibacter altiplanensis AN4 [NCRA]
114
42
-
Gln
TTG
[ENA]
¡û
>W1910870241
NCRB01000060
Rhodothermota
Salinivenus iranica CB7 [NCRB]
10351
10423
+
Gln
TTG
[ENA]
¡û
>W1910870292
NCRC01000054
Rhodothermota
Salinivenus lutea DBO [NCRC]
3996
4068
+
Gln
TTG
[ENA]
¡û
>W1810053864
PDEQ01000004
Rhodothermota
Longibacter salinarum KCTC 52045 [PDEQ]
223727
223798
+
Gln
TTG
[ENA]
¡û
>C131018257
FP565814
Rhodothermota
Salinibacter ruber M8 [FP565814]
1132707
1132634
-
Gln
TTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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