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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.416655 (25 seq.)
>W1710987509
LPUR01000017
Bacteroidota
Chryseobacterium kwangjuense [LPUR]
107544
107471
-
Pseudo
GTC
[ENA]
¡û
>W1711318322
MAYF01000311
Bacteroidota
Chryseobacterium contaminans [MAYF]
19328
19255
-
Pseudo
GTC
[ENA]
¡û
>W141261514
CCAV010000004
Bacteroidota
Chryseobacterium oranimense G311 [CCAV]
291508
291435
-
Pseudo
GTC
[ENA]
¡û
>WENV183741657
PJUG01000355
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
6033
6104
+
Asp
GTC
[ENA]
¢þ
>WENV183742124
PJUH01000390
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
1157
1086
-
Asp
GTC
[ENA]
¢þ
>WENV183742682
PJUI01000058
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
96340
96269
-
Asp
GTC
[ENA]
¢þ
>C191115690
CP033922
Bacteroidota
Chryseobacterium sp. G0162 [CP033922]
1599993
1599922
-
Asp
GTC
-
¡û
>C191115732
CP033923
Bacteroidota
Chryseobacterium nakagawai G0041 [CP033923]
3991332
3991403
+
Asp
GTC
-
¡û
>C191116297
CP033931
Bacteroidota
Chryseobacterium bernardetii H4638 [CP033931]
4047094
4047165
+
Asp
GTC
-
¡û
>C191116375
CP033932
Bacteroidota
Chryseobacterium bernardetii G0229 [CP033932]
2066330
2066401
+
Asp
GTC
-
¡û
>C191209957
LR134386
Bacteroidota
Chryseobacterium nakagawai NCTC13529 [LR134386]
1078030
1078101
+
Asp
GTC
-
¡û
>W1910439649
FWDI01000005
Bacteroidota
Chryseobacterium phocaeense 6021061333 [FWDI]
147842
147913
+
Asp
GTC
[ENA]
¡û
>W1911218409
NRQS01000007
Bacteroidota
Chryseobacterium sp. CH1 [NRQS]
152392
152463
+
Asp
GTC
[ENA]
¡û
>W1911218495
NRQT01000014
Bacteroidota
Chryseobacterium sp. CH25 [NRQT]
404
475
+
Asp
GTC
[ENA]
¡û
>W1911701806
QNVT01000017
Bacteroidota
Chryseobacterium pennae 1_F178 [QNVT]
87295
87224
-
Asp
GTC
[ENA]
¡û
>W1510072586
CDHM01000004
Bacteroidota
Chryseobacterium oranimense G311 [CDHM]
291508
291435
-
Asp
GTC
[ENA]
¡û
>W1511587139
LAZY01000022
Bacteroidota
Chryseobacterium indologenes J31 [LAZY]
52379
52452
+
Asp
GTC
[ENA]
¡û
>W1511685254
LFNF01000003
Bacteroidota
Chryseobacterium sp. BLS98 [LFNF]
106510
106583
+
Asp
GTC
[ENA]
¡û
>W1610436666
FJVD01000005
Bacteroidota
Chryseobacterium timonianum G972 [FJVD]
302747
302674
-
Pseudo
GTC
[ENA]
¡û
>W1610842453
LPUR01000017
Bacteroidota
Chryseobacterium kwangjuense [LPUR]
107544
107471
-
Pseudo
GTC
[ENA]
¡û
>W1611061665
MAYF01000311
Bacteroidota
Chryseobacterium contaminans [MAYF]
19328
19255
-
Pseudo
GTC
[ENA]
¡û
>W1710436402
FJVD01000005
Bacteroidota
Chryseobacterium timonianum G972 [FJVD]
302747
302674
-
Pseudo
GTC
[ENA]
¡û
>W1710518832
FNEG01000009
Bacteroidota
Chryseobacterium jejuense [FNEG]
41899
41826
-
Pseudo
GTC
[ENA]
¡û
>W1710585949
FQWT01000008
Bacteroidota
Chryseobacterium oranimense [FQWT]
110035
110108
+
Pseudo
GTC
[ENA]
¡û
>W1710591107
FRBM01000008
Bacteroidota
Chryseobacterium contaminans [FRBM]
125492
125565
+
Pseudo
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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