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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.416661 (86 seq.)
>W1710905379
LNNF01000166
Bacteroidota
Flavobacterium psychrophilum [LNNF]
18894
18821
-
Gln
TTG
[ENA]
¡û
>W1710914541
LNTP01000101
Bacteroidota
Flavobacterium psychrophilum [LNTP]
18897
18824
-
Gln
TTG
[ENA]
¡û
>W1710914580
LNTQ01000068
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
41531
41604
+
Gln
TTG
[ENA]
¡û
>W1711053980
LRTL01000002
Bacteroidota
Flavobacterium psychrophilum [LRTL]
198198
198125
-
Gln
TTG
[ENA]
¡û
>W1711431519
MIJV01000034
Bacteroidota
Flavobacterium psychrophilum [MIJV]
16134
16207
+
Gln
TTG
[ENA]
¡û
>W1711431559
MIJW01000053
Bacteroidota
Flavobacterium psychrophilum [MIJW]
8732
8659
-
Gln
TTG
[ENA]
¡û
>W1711712441
MTBY01000005
Bacteroidota
Flavobacterium psychrophilum [MTBY]
16279
16352
+
Gln
TTG
[ENA]
¡û
>W1711712477
MTBZ01000003
Bacteroidota
Flavobacterium psychrophilum [MTBZ]
8697
8624
-
Gln
TTG
[ENA]
¡û
>W1711712584
MTCB01000015
Bacteroidota
Flavobacterium psychrophilum [MTCB]
632612
632685
+
Gln
TTG
[ENA]
¡û
>W1711712610
MTCC01000013
Bacteroidota
Flavobacterium psychrophilum [MTCC]
482285
482358
+
Gln
TTG
[ENA]
¡û
>W1711712630
MTCD01000007
Bacteroidota
Flavobacterium psychrophilum [MTCD]
14483
14556
+
Gln
TTG
[ENA]
¡û
>C009494
AM398681
Bacteroidota
Flavobacterium psychrophilum JIP02/86 [AM398681]
363538
363611
+
Gln
TTG
[Ensembl]
¡û
>WENV181170633
OEIV010068807
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
194
123
-
Gln
TTG
[ENA]
¢þ
>WENV170956835
MJUP01269791
[MJUP] soil metagenome; viral particles from soil sample MGM
131
204
+
Gln
TTG
[ENA]
¢þ
>C181220252
LT670843
Bacteroidota
Flavobacterium psychrophilum OSU THCO2-90 [LT670843]
379910
379981
+
Gln
TTG
-
¡û
>W1910184588
BJSV01000028
Bacteroidota
Flavobacterium psychrophilum NNS1-1804 [BJSV]
16223
16294
+
Gln
TTG
[ENA]
¡û
>W1910184632
BJSW01000041
Bacteroidota
Flavobacterium psychrophilum NNS2-1804 [BJSW]
16223
16294
+
Gln
TTG
[ENA]
¡û
>W1910184650
BJSX01000010
Bacteroidota
Flavobacterium psychrophilum NNS4-1804 [BJSX]
16222
16293
+
Gln
TTG
[ENA]
¡û
>W1910184716
BJSY01000067
Bacteroidota
Flavobacterium psychrophilum NNS5-1804 [BJSY]
16224
16295
+
Gln
TTG
[ENA]
¡û
>W1910184744
BJSZ01000043
Bacteroidota
Flavobacterium psychrophilum NNS6-1804 [BJSZ]
16223
16294
+
Gln
TTG
[ENA]
¡û
>W1910184778
BJTA01000032
Bacteroidota
Flavobacterium psychrophilum NNS7-1804 [BJTA]
16223
16294
+
Gln
TTG
[ENA]
¡û
>W1910184873
BJTD01000015
Bacteroidota
Flavobacterium psychrophilum KKAC-1706 [BJTD]
11348
11277
-
Gln
TTG
[ENA]
¡û
>W1910184927
BJTE01000045
Bacteroidota
Flavobacterium psychrophilum KKOK-1706 [BJTE]
23716
23645
-
Gln
TTG
[ENA]
¡û
>W1910184959
BJTF01000028
Bacteroidota
Flavobacterium psychrophilum KHIR-1705 [BJTF]
16223
16294
+
Gln
TTG
[ENA]
¡û
>W1910502972
FYBY01000007
Bacteroidota
Flavobacterium psychrophilum CH8 [FYBY]
15962
16033
+
Gln
TTG
[ENA]
¡û
>W1910503020
FYBZ01000032
Bacteroidota
Flavobacterium psychrophilum FRGDSA 1882/11 [FYBZ]
24233
24162
-
Gln
TTG
[ENA]
¡û
>W1910503057
FYCA01000061
Bacteroidota
Flavobacterium psychrophilum FI055 [FYCA]
23483
23412
-
Gln
TTG
[ENA]
¡û
>W1910503099
FYCB01000066
Bacteroidota
Flavobacterium psychrophilum DK150 [FYCB]
7433
7504
+
Gln
TTG
[ENA]
¡û
>W1910503102
FYCC01000008
Bacteroidota
Flavobacterium psychrophilum FI056 [FYCC]
23580
23509
-
Gln
TTG
[ENA]
¡û
>W1910503134
FYCD01000002
Bacteroidota
Flavobacterium psychrophilum DK001 [FYCD]
18868
18797
-
Gln
TTG
[ENA]
¡û
>W1910503182
FYCE01000041
Bacteroidota
Flavobacterium psychrophilum FI146 [FYCE]
8528
8457
-
Gln
TTG
[ENA]
¡û
>W1910503229
FYCF01000040
Bacteroidota
Flavobacterium psychrophilum DK002 [FYCF]
15960
16031
+
Gln
TTG
[ENA]
¡û
>W1910503237
FYCG01000004
Bacteroidota
Flavobacterium psychrophilum FI070 [FYCG]
22700
22629
-
Gln
TTG
[ENA]
¡û
>W1910503286
FYCH01000024
Bacteroidota
Flavobacterium psychrophilum CH1895 [FYCH]
13039
13110
+
Gln
TTG
[ENA]
¡û
>W1910503302
FYCI01000001
Bacteroidota
Flavobacterium psychrophilum DK095 [FYCI]
8485
8414
-
Gln
TTG
[ENA]
¡û
>W1910503520
FYCM01000047
Bacteroidota
Flavobacterium psychrophilum FPC 831 [FYCM]
18904
18975
+
Gln
TTG
[ENA]
¡û
>W1910503545
FYCN01000113
Bacteroidota
Flavobacterium psychrophilum JIP 08/99 [FYCN]
11065
10994
-
Gln
TTG
[ENA]
¡û
>W1910503579
FYCO01000037
Bacteroidota
Flavobacterium psychrophilum IT02 [FYCO]
24207
24136
-
Gln
TTG
[ENA]
¡û
>W1910503600
FYCP01000102
Bacteroidota
Flavobacterium psychrophilum KU 051128-10 [FYCP]
2907
2836
-
Gln
TTG
[ENA]
¡û
>W1910503625
FYCQ01000142
Bacteroidota
Flavobacterium psychrophilum KU 061128-1 [FYCQ]
2906
2835
-
Gln
TTG
[ENA]
¡û
>W1910503646
FYCR01000259
Bacteroidota
Flavobacterium psychrophilum JIP 16/00 [FYCR]
11078
11149
+
Gln
TTG
[ENA]
¡û
>W1910503658
FYCS01000013
Bacteroidota
Flavobacterium psychrophilum IT09 [FYCS]
23580
23509
-
Gln
TTG
[ENA]
¡û
>W1910503701
FYCT01000020
Bacteroidota
Flavobacterium psychrophilum FI166 [FYCT]
15960
16031
+
Gln
TTG
[ENA]
¡û
>W1910503736
FYCU01000120
Bacteroidota
Flavobacterium psychrophilum KU 060626-4 [FYCU]
15391
15462
+
Gln
TTG
[ENA]
¡û
>W1910503769
FYCV01000204
Bacteroidota
Flavobacterium psychrophilum KU 060626-59 [FYCV]
15392
15463
+
Gln
TTG
[ENA]
¡û
>W1910503781
FYCW01000012
Bacteroidota
Flavobacterium psychrophilum LM-01-Fp [FYCW]
23580
23509
-
Gln
TTG
[ENA]
¡û
>W1910503826
FYCX01000048
Bacteroidota
Flavobacterium psychrophilum NO004 [FYCX]
141238
141309
+
Gln
TTG
[ENA]
¡û
>W1910503867
FYCY01000045
Bacteroidota
Flavobacterium psychrophilum NO014 [FYCY]
11095
11024
-
Gln
TTG
[ENA]
¡û
>W1910503895
FYCZ01000017
Bacteroidota
Flavobacterium psychrophilum LM-02-Fp [FYCZ]
23580
23509
-
Gln
TTG
[ENA]
¡û
>W1910503928
FYDA01000019
Bacteroidota
Flavobacterium psychrophilum NO042 [FYDA]
17387
17458
+
Gln
TTG
[ENA]
¡û
>W1910503973
FYDB01000039
Bacteroidota
Flavobacterium psychrophilum NO098 [FYDB]
8534
8463
-
Gln
TTG
[ENA]
¡û
>W1910504008
FYDC01000016
Bacteroidota
Flavobacterium psychrophilum NO083 [FYDC]
23580
23509
-
Gln
TTG
[ENA]
¡û
>W1910504143
FYDF01000250
Bacteroidota
Flavobacterium psychrophilum LVDJ XP189 [FYDF]
15302
15373
+
Gln
TTG
[ENA]
¡û
>W1910505677
FYEO01000005
Bacteroidota
Flavobacterium psychrophilum FPC 840 [FYEO]
14126
14197
+
Gln
TTG
[ENA]
¡û
>W1910576482
JSCD01000005
Bacteroidota
Flavobacterium psychrophilum 10 [JSCD]
180611
180682
+
Gln
TTG
[ENA]
¡û
>W1910576611
JSWL01000001
Bacteroidota
Flavobacterium psychrophilum IWL08 [JSWL]
605950
606021
+
Gln
TTG
[ENA]
¡û
>W1910809516
MUHE01000048
Bacteroidota
Flavobacterium psychrophilum DSM 3660 = ATCC 49418 [MUHE]
59799
59870
+
Gln
TTG
[ENA]
¡û
>W1810695885
QLSV01000006
Bacteroidota
Flavobacterium lacus CGMCC 1.12504 [QLSV]
145754
145825
+
Gln
TTG
[ENA]
¡û
>C151018488
CP007206
Bacteroidota
Flavobacterium psychrophilum FPG101 [CP007206]
376718
376791
+
Gln
TTG
[Ensembl]
¡û
>C151018536
CP007207
Bacteroidota
Flavobacterium psychrophilum FPG3 [CP007207]
376100
376173
+
Gln
TTG
[Ensembl]
¡û
>C151030324
CP007627
Bacteroidota
Flavobacterium psychrophilum CSF259-93 [CP007627]
379010
379083
+
Gln
TTG
[Ensembl]
¡û
>C151038958
CP008878
Bacteroidota
Flavobacterium psychrophilum V3-5 [CP008878]
324566
324639
+
Gln
TTG
[Ensembl]
¡û
>C151038996
CP008881
Bacteroidota
Flavobacterium psychrophilum V4-24 [CP008881]
312450
312523
+
Gln
TTG
[Ensembl]
¡û
>C151039033
CP008883
Bacteroidota
Flavobacterium psychrophilum v4-33 [CP008883]
324069
324142
+
Gln
TTG
[Ensembl]
¡û
>C151039523
CP008902
Bacteroidota
Flavobacterium psychrophilum 950106-1/1 [CP008902]
313806
313879
+
Gln
TTG
[Ensembl]
¡û
>C151065046
CP010274
Bacteroidota
Flavobacterium psychrophilum 5 [CP010274]
361920
361993
+
Gln
TTG
-
¡û
>C151065094
CP010276
Bacteroidota
Flavobacterium psychrophilum PG2 [CP010276]
361714
361787
+
Gln
TTG
-
¡û
>C151072407
CP010798
Bacteroidota
Flavobacterium psychrophilum [CP010798]
303571
303498
-
Gln
TTG
-
¡û
>W1511357138
JRWA01000006
Bacteroidota
Flavobacterium psychrophilum CSF-259-93 [JRWA]
143600
143673
+
Gln
TTG
[ENA]
¡û
>W1511357180
JRWB01000013
Bacteroidota
Flavobacterium psychrophilum CN [JRWB]
73205
73278
+
Gln
TTG
[ENA]
¡û
>W1511357221
JRWC01000003
Bacteroidota
Flavobacterium psychrophilum CR [JRWC]
149966
150039
+
Gln
TTG
[ENA]
¡û
>W1511357266
JRWD01000019
Bacteroidota
Flavobacterium psychrophilum THC 02-90 [JRWD]
13788
13861
+
Gln
TTG
[ENA]
¡û
>W1511357313
JRWE01000018
Bacteroidota
Flavobacterium psychrophilum TN [JRWE]
13788
13861
+
Gln
TTG
[ENA]
¡û
>W1511357360
JRWF01000017
Bacteroidota
Flavobacterium psychrophilum TR [JRWF]
13788
13861
+
Gln
TTG
[ENA]
¡û
>C161024413
CP010275
Bacteroidota
Flavobacterium psychrophilum MH1 [CP010275]
362219
362292
+
Gln
TTG
-
¡û
>C161024461
CP010277
Bacteroidota
Flavobacterium psychrophilum VQ50 [CP010277]
362402
362475
+
Gln
TTG
-
¡û
>C161024509
CP010278
Bacteroidota
Flavobacterium psychrophilum 3 [CP010278]
362449
362522
+
Gln
TTG
-
¡û
>W1610062195
BCNG01000021
Bacteroidota
Flavobacterium psychrophilum [BCNG]
16200
16273
+
Gln
TTG
[ENA]
¡û
>W1610764393
LNNF01000166
Bacteroidota
Flavobacterium psychrophilum [LNNF]
18894
18821
-
Gln
TTG
[ENA]
¡û
>W1610772900
LNTP01000101
Bacteroidota
Flavobacterium psychrophilum [LNTP]
18897
18824
-
Gln
TTG
[ENA]
¡û
>W1610772939
LNTQ01000068
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
41531
41604
+
Gln
TTG
[ENA]
¡û
>W1610895168
LRTL01000002
Bacteroidota
Flavobacterium psychrophilum [LRTL]
198198
198125
-
Gln
TTG
[ENA]
¡û
>W1710059736
BCNG01000021
Bacteroidota
Flavobacterium psychrophilum [BCNG]
16200
16273
+
Gln
TTG
[ENA]
¡û
>W1710087868
BDSH01000021
Bacteroidota
Flavobacterium psychrophilum [BDSH]
16188
16261
+
Gln
TTG
[ENA]
¡û
>W1710507323
FMVE01000006
Bacteroidota
Flavobacterium psychrophilum DSM 3660 [FMVE]
24548
24475
-
Gln
TTG
[ENA]
¡û
>W1710555825
FOJT01000003
Bacteroidota
Flavobacterium swingsii [FOJT]
331380
331453
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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