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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.417120 (12 seq.)
>WENV183729747
PJTR01000043
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
144342
144413
+
Gln
TTG
[ENA]
¢þ
>C181063656
CP022382
Bacteroidota
Capnocytophaga canimorsus 7120 [CP022382]
1344461
1344532
+
Gln
TTG
-
¡û
>C181063929
CP022388
Bacteroidota
Capnocytophaga canimorsus H5594 [CP022388]
1298542
1298613
+
Gln
TTG
-
¡û
>C181063972
CP022389
Bacteroidota
Capnocytophaga canimorsus H3936 [CP022389]
1361728
1361799
+
Gln
TTG
-
¡û
>C181175919
CP029186
Bacteroidota
Flavobacterium album HYN0059 [CP029186]
491339
491268
-
Gln
TTG
-
¡û
>C191093547
CP032681
Bacteroidota
Capnocytophaga canimorsus RBWH [CP032681]
1695948
1696019
+
Gln
TTG
-
¡û
>C191213472
LR134513
Bacteroidota
Capnocytophaga canimorsus NCTC11921 [LR134513]
1323215
1323286
+
Gln
TTG
-
¡û
>W1810101892
PGTV01000001
Bacteroidota
Capnocytophaga canimorsus DSM 19204 [PGTV]
342877
342806
-
Gln
TTG
[ENA]
¡û
>W1510076208
CDOE01000080
Bacteroidota
Capnocytophaga canimorsus Cc12 [CDOE]
36813
36886
+
Gln
TTG
[ENA]
¡û
>W1510076379
CDOJ01000058
Bacteroidota
Capnocytophaga canimorsus Cc2 [CDOJ]
6022
6095
+
Gln
TTG
[ENA]
¡û
>W1510076408
CDOK01000039
Bacteroidota
Capnocytophaga canimorsus Cc11 [CDOK]
83
10
-
Gln
TTG
[ENA]
¡û
>C11104990
CP002113
Bacteroidota
Capnocytophaga canimorsus Cc5 [CP002113]
2244048
2244121
+
Gln
TTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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