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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.417266 (19 seq.)
>W131164169
ARAI01000027
Bacteroidota
Capnocytophaga cynodegmi DSM 19736 [ARAI]
19846
19919
+
Gln
TTG
[ENA]
¡û
>WENV180732629
ODGY01001867
[ODGY] human metagenome; G_DNA_Supragingival plaque
5325
5398
+
Gln
TTG
[ENA]
¢þ
>WENV180888134
ODMN01000079
[ODMN] human metagenome; G_DNA_Supragingival plaque
49138
49065
-
Gln
TTG
[ENA]
¢þ
>WENV181227908
OFDN01075322
[OFDN] hot springs metagenome; Water
171
100
-
Gln
TTG
[ENA]
¢þ
>WENV170551179
CXWJ01000900
[CXWJ] wastewater metagenome; activated sludge
145755
145828
+
Gln
TTG
[ENA]
¢þ
>C181063470
CP022378
Bacteroidota
Capnocytophaga cynodegmi G7591 [CP022378]
1527405
1527476
+
Gln
TTG
-
¡û
>C181063580
CP022380
Bacteroidota
Capnocytophaga sp. H4358 [CP022380]
1552447
1552376
-
Gln
TTG
-
¡û
>C181063627
CP022381
Bacteroidota
Capnocytophaga sp. H2931 [CP022381]
1509398
1509327
-
Gln
TTG
-
¡û
>C181063904
CP022387
Bacteroidota
Capnocytophaga stomatis H2177 [CP022387]
1217512
1217441
-
Gln
TTG
-
¡û
>C181224946
LT906449
Bacteroidota
Capnocytophaga haemolytica NCTC12947 [LT906449]
1438947
1439020
+
Gln
TTG
-
¡û
>W1911239243
NSDI01000004
Bacteroidota
Capnocytophaga canis 17-158 [NSDI]
149585
149514
-
Gln
TTG
[ENA]
¡û
>W1510076166
CDOD01000045
Bacteroidota
Capnocytophaga cynodegmi Ccyn2B [CDOD]
67683
67610
-
Gln
TTG
[ENA]
¡û
>W1510076231
CDOF01000059
Bacteroidota
Capnocytophaga cynodegmi Ccyn_ATCC49044 [CDOF]
3412
3485
+
Gln
TTG
[ENA]
¡û
>W1510076264
CDOG01000023
Bacteroidota
Capnocytophaga cynodegmi Ccy74 [CDOG]
210174
210247
+
Gln
TTG
[ENA]
¡û
>W1510076306
CDOH01000105
Bacteroidota
Capnocytophaga canis CcD95 [CDOH]
16063
16136
+
Gln
TTG
[ENA]
¡û
>W1510076343
CDOI01000101
Bacteroidota
Capnocytophaga canis CcD38 [CDOI]
52473
52400
-
Gln
TTG
[ENA]
¡û
>W1510076478
CDOL01000268
Bacteroidota
Capnocytophaga canis CcD93 [CDOL]
16523
16596
+
Gln
TTG
[ENA]
¡û
>C161068909
CP014227
Bacteroidota
Capnocytophaga haemolytica CCUG 32990 [CP014227]
425388
425315
-
Gln
TTG
[Ensembl]
¡û
>W1710571433
FOVX01000009
Bacteroidota
Capnocytophaga haemolytica [FOVX]
71860
71933
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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