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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.417658 (81 seq.)
>W1710869774
LMJZ01000012
Alphaproteobacteria
Sphingomonas sp. Leaf5 [LMJZ]
122245
122172
-
Gly
TCC
[ENA]
¡û
>W1710870158
LMKH01000012
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
385550
385477
-
Gly
TCC
[ENA]
¡û
>W1710870443
LMKN01000001
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
1022869
1022942
+
Gly
TCC
[ENA]
¡û
>W1710870549
LMKP01000017
Alphaproteobacteria
Sphingomonas sp. Leaf22 [LMKP]
24696
24769
+
Gly
TCC
[ENA]
¡û
>W1710870694
LMKS01000012
Alphaproteobacteria
Sphingomonas sp. Leaf24 [LMKS]
122246
122173
-
Gly
TCC
[ENA]
¡û
>W1710870749
LMKT01000023
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
685145
685072
-
Gly
TCC
[ENA]
¡û
>W1710870795
LMKU01000023
Alphaproteobacteria
Sphingomonas sp. Leaf25 [LMKU]
69190
69117
-
Gly
TCC
[ENA]
¡û
>W1710870882
LMKW01000008
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
589325
589252
-
Gly
TCC
[ENA]
¡û
>W1710870948
LMKX01000008
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
212348
212275
-
Gly
TCC
[ENA]
¡û
>W1710871159
LMLC01000001
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
642694
642767
+
Gly
TCC
[ENA]
¡û
>W1710871237
LMLD01000011
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
510831
510758
-
Gly
TCC
[ENA]
¡û
>W1710871327
LMLF01000007
Alphaproteobacteria
Sphingomonas sp. Leaf42 [LMLF]
309096
309169
+
Gly
TCC
[ENA]
¡û
>W1710871829
LMLN01000003
Alphaproteobacteria
Sphingomonas sp. Leaf62 [LMLN]
57374
57447
+
Gly
TCC
[ENA]
¡û
>W1710871956
LMLP01000023
Alphaproteobacteria
Sphingomonas sp. Leaf67 [LMLP]
204428
204355
-
Gly
TCC
[ENA]
¡û
>W1710872092
LMLS01000003
Alphaproteobacteria
Sphingomonas sp. Leaf231 [LMLS]
77647
77720
+
Gly
TCC
[ENA]
¡û
>W1710872312
LMLW01000009
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
97450
97377
-
Gly
TCC
[ENA]
¡û
>W1710877217
LMPX01000002
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
892168
892241
+
Gly
TCC
[ENA]
¡û
>W1710878005
LMQO01000004
Alphaproteobacteria
Sphingomonas sp. Leaf407 [LMQO]
309133
309206
+
Gly
TCC
[ENA]
¡û
>W1710894017
LNFI01000003
Alphaproteobacteria
Sphingomonadales bacterium Ga0077557 [LNFI]
48802
48875
+
Gly
TCC
[ENA]
¡û
>W131213820
ATTI01000001
Alphaproteobacteria
Sphingomonas phyllosphaerae 5.2 [ATTI]
292421
292494
+
Gly
TCC
[ENA]
¡û
>W131219279
ATYK01000003
Alphaproteobacteria
Sphingomonas phyllosphaerae FA2 [ATYK]
406746
406819
+
Gly
TCC
[ENA]
¡û
>C171030415
CP014168
Alphaproteobacteria
Sphingomonas panacis DCY99 [CP014168]
2086511
2086438
-
Gly
TCC
-
¡û
>C171095065
CP019511
Alphaproteobacteria
Sphingomonas sp. LM7 [CP019511]
3804178
3804105
-
Gly
TCC
-
¡û
>WENV181145380
OEHO01286057
[OEHO] metagenome; unknown
138
65
-
Gly
TCC
[ENA]
¢þ
>WENV181379847
OFRD01011733
[OFRD] wastewater metagenome; Exp Tend CN 100WW
1649
1576
-
Gly
TCC
[ENA]
¢þ
>WENV181383956
OFRH01002334
[OFRH] wastewater metagenome; Exp Tend NO 100WW
1290
1217
-
Gly
TCC
[ENA]
¢þ
>WENV181385918
OFRL01000101
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
10507
10434
-
Gly
TCC
[ENA]
¢þ
>WENV181399536
OFSE01040972
[OFSE] wastewater metagenome; Exp Tend VB 50WW
397
470
+
Gly
TCC
[ENA]
¢þ
>WENV181400061
OFSF01001138
[OFSF] wastewater metagenome; Exp Tend VB 100WW
4783
4856
+
Gly
TCC
[ENA]
¢þ
>WENV170577570
FSSH01000208
[FSSH] freshwater metagenome; drinking water
108807
108880
+
Gly
TCC
[ENA]
¢þ
>WENV170577671
FSSH01000509
[FSSH] freshwater metagenome; drinking water
7702
7775
+
Gly
TCC
[ENA]
¢þ
>WENV170577915
FSSH01002675
[FSSH] freshwater metagenome; drinking water
2123
2196
+
Gly
TCC
[ENA]
¢þ
>WENV170700889
LJSS01005887
[LJSS] hot springs metagenome; water from Lobios Hot Spring
634
561
-
Gly
TCC
[ENA]
¢þ
>WENV170710836
LNFM01002776
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
48779
48852
+
Gly
TCC
[ENA]
¢þ
>C191154783
CP037913
Alphaproteobacteria
Sphingomonas sp. AAP5 [CP037913]
528042
527969
-
Gly
TCC
-
¡û
>C191163740
CP039249
Alphaproteobacteria
Sphingomonas sp. PAMC26645 [CP039249]
1045515
1045588
+
Gly
TCC
-
¡û
>W141801047
JPDP01000726
Alphaproteobacteria
Sphingomonas sp. STIS6.2 [JPDP]
31604
31531
-
Gly
TCC
[ENA]
¡û
>W141805173
JPJC01000161
Alphaproteobacteria
Sphingomonas sp. FUKUSWIS1 [JPJC]
303
376
+
Gly
TCC
[ENA]
¡û
>W1810463398
PZZN01000001
Alphaproteobacteria
Sphingomonas aerolata NW12 [PZZN]
811089
811162
+
Gly
TCC
[ENA]
¡û
>W1810475051
QAIS01000205
Alphaproteobacteria
Sphingomonas sp. HMWF008 [QAIS]
636
709
+
Gly
TCC
[ENA]
¡û
>W1810476724
QAOF01000007
Alphaproteobacteria
Sphingomonas sp. PP-CE-3G-477 [QAOF]
118928
119001
+
Gly
TCC
[ENA]
¡û
>W1810476767
QAOG01000003
Alphaproteobacteria
Sphingomonas aurantiaca MA101b [QAOG]
211193
211120
-
Gly
TCC
[ENA]
¡û
>W1810486873
QAYE01000001
Alphaproteobacteria
Sphingomonas faeni MA-olki [QAYE]
160534
160607
+
Gly
TCC
[ENA]
¡û
>W1810779191
QQNB01000002
Alphaproteobacteria
Sphingomonas aracearum WZY 27 [QQNB]
916993
916920
-
Gly
TCC
[ENA]
¡û
>SRA1014111
SRR023845.4021
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
153
226
+
Gly
TCC
[SRA]
>SRA1014272
SRR023845.66897
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
22
95
+
Gly
TCC
[SRA]
>SRA1014717
SRR023845.278298
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
218
145
-
Gly
TCC
[SRA]
>SRA1014790
SRR023845.316249
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
192
265
+
Gly
TCC
[SRA]
>SRA1015067
SRR023845.446579
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
20
93
+
Gly
TCC
[SRA]
>SRA1015740
SRR023846.177278
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
83
10
-
Gly
TCC
[SRA]
>SRA1016167
SRR023846.377201
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
88
161
+
Gly
TCC
[SRA]
>SRA1016173
SRR023846.378591
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
242
169
-
Gly
TCC
[SRA]
>SRA1016174
SRR023846.379156
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
242
169
-
Gly
TCC
[SRA]
>SRA1016258
SRR023846.422948
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
45
118
+
Gly
TCC
[SRA]
>SRA1016531
SRR023846.545059
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
88
161
+
Gly
TCC
[SRA]
>C151054334
CP009571
Alphaproteobacteria
Sphingomonas taxi ATCC 55669 [CP009571]
777438
777511
+
Gly
TCC
[Ensembl]
¡û
>C151073198
CP010836
Alphaproteobacteria
Sphingomonas hengshuiensis WHSC-8 [CP010836]
3702282
3702355
+
Gly
TCC
[Ensembl]
¡û
>W1511357050
JRVI01000028
Alphaproteobacteria
Sphingomonas sp. Ant20 [JRVI]
31800
31727
-
Gly
TCC
[ENA]
¡û
>W1511361497
JSBN01000063
Alphaproteobacteria
Sphingomonas sp. Ant H11 [JSBN]
102449
102522
+
Gly
TCC
[ENA]
¡û
>W121031759
AHHA01000021
Alphaproteobacteria
Sphingomonas sp. PAMC 26617 [AHHA]
238908
238835
-
Gly
TCC
[ENA]
¡û
>W121033232
AHIR01000012
Alphaproteobacteria
Sphingomonas echinoides ATCC 14820 [AHIR]
118406
118479
+
Gly
TCC
[ENA]
¡û
>W121033302
AHIS01000105
Alphaproteobacteria
Sphingomonas sp. PAMC 26605 [AHIS]
8612
8685
+
Gly
TCC
[ENA]
¡û
>W121046794
AIDW01000009
Alphaproteobacteria
Sphingomonas sp. PAMC 26621 [AIDW]
205342
205269
-
Gly
TCC
[ENA]
¡û
>W1610732120
LMJZ01000012
Alphaproteobacteria
Sphingomonas sp. Leaf5 [LMJZ]
122245
122172
-
Gly
TCC
[ENA]
¡û
>W1610732504
LMKH01000012
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
385550
385477
-
Gly
TCC
[ENA]
¡û
>W1610732789
LMKN01000001
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
1022869
1022942
+
Gly
TCC
[ENA]
¡û
>W1610732895
LMKP01000017
Alphaproteobacteria
Sphingomonas sp. Leaf22 [LMKP]
24696
24769
+
Gly
TCC
[ENA]
¡û
>W1610733040
LMKS01000012
Alphaproteobacteria
Sphingomonas sp. Leaf24 [LMKS]
122246
122173
-
Gly
TCC
[ENA]
¡û
>W1610733095
LMKT01000023
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
685145
685072
-
Gly
TCC
[ENA]
¡û
>W1610733141
LMKU01000023
Alphaproteobacteria
Sphingomonas sp. Leaf25 [LMKU]
69190
69117
-
Gly
TCC
[ENA]
¡û
>W1610733228
LMKW01000008
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
589325
589252
-
Gly
TCC
[ENA]
¡û
>W1610733294
LMKX01000008
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
212348
212275
-
Gly
TCC
[ENA]
¡û
>W1610733505
LMLC01000001
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
642694
642767
+
Gly
TCC
[ENA]
¡û
>W1610733673
LMLF01000007
Alphaproteobacteria
Sphingomonas sp. Leaf42 [LMLF]
309096
309169
+
Gly
TCC
[ENA]
¡û
>W1610734175
LMLN01000003
Alphaproteobacteria
Sphingomonas sp. Leaf62 [LMLN]
57374
57447
+
Gly
TCC
[ENA]
¡û
>W1610734438
LMLS01000003
Alphaproteobacteria
Sphingomonas sp. Leaf231 [LMLS]
77647
77720
+
Gly
TCC
[ENA]
¡û
>W1610734658
LMLW01000009
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
97450
97377
-
Gly
TCC
[ENA]
¡û
>W1610739563
LMPX01000002
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
892168
892241
+
Gly
TCC
[ENA]
¡û
>W1610740351
LMQO01000004
Alphaproteobacteria
Sphingomonas sp. Leaf407 [LMQO]
309133
309206
+
Gly
TCC
[ENA]
¡û
>W1610754283
LNFI01000003
Alphaproteobacteria
Sphingomonadales bacterium Ga0077557 [LNFI]
48802
48875
+
Gly
TCC
[ENA]
¡û
>W1710571522
FOVZ01000002
Alphaproteobacteria
Sphingomonas sp. OK281 [FOVZ]
16864
16791
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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