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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.417724 (32 seq.)
>W131002595
AGYY01000004
Betaproteobacteria
Delftia acidovorans CCUG 15835 [AGYY]
199246
199173
-
Gly
CCC
[ENA]
¡û
>W1711172939
LWCN01000003
Betaproteobacteria
Delftia sp. GW456-R20 [LWCN]
179315
179388
+
Gly
CCC
[ENA]
¡û
>W1711574852
MNGK01000170
Betaproteobacteria
Delftia sp. 13_1_40CM_3_66_6 [MNGK]
25140
25067
-
Gly
CCC
[ENA]
¡û
>W1711575564
MNIU01000029
Betaproteobacteria
Delftia sp. 13_1_20CM_4_67_18 [MNIU]
286821
286894
+
Gly
CCC
[ENA]
¡û
>W1711853536
MYFL01000001
Betaproteobacteria
Delftia sp. K82 [MYFL]
1849335
1849262
-
Gly
CCC
[ENA]
¡û
>C171062146
CP017420
Betaproteobacteria
Delftia tsuruhatensis CM13 [CP017420]
1401659
1401732
+
Gly
CCC
-
¡û
>C171072900
CP018101
Betaproteobacteria
Delftia sp. HK171 [CP018101]
4218918
4218991
+
Gly
CCC
-
¡û
>C171089897
CP019171
Betaproteobacteria
Delftia acidovorans [CP019171]
4309263
4309336
+
Gly
CCC
-
¡û
>w020840
AAVD01000019
Betaproteobacteria
Delftia acidovorans SPH-1 [AAVD]
12041
11966
-
Gly
CCC
[ENA]
¡û
>C08004026
CP000884
Betaproteobacteria
Delftia acidovorans SPH-1 [CP000884]
4531404
4531477
+
Gly
CCC
[Ensembl]
¡û
>WENV183739559
PJUE01031940
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
337
410
+
Gly
CCC
[ENA]
¢þ
>WENV170018757
BBPD01000689
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
3434
3361
-
Gly
CCC
[ENA]
¢þ
>WENV170019976
BBPE01002017
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
704
777
+
Gly
CCC
[ENA]
¢þ
>W141484609
JFYT01000037
Betaproteobacteria
Delftia sp. RIT313 [JFYT]
49075
49148
+
Gly
CCC
[ENA]
¡û
>W141755042
JNWI01000017
Betaproteobacteria
Delftia sp. 670 [JNWI]
51817
51890
+
Gly
CCC
[ENA]
¡û
>W141789867
JOUB01000003
Betaproteobacteria
Delftia acidovorans [JOUB]
558982
559055
+
Gly
CCC
[ENA]
¡û
>W1911497692
OCRO01000001
Betaproteobacteria
Delftia acidovorans ATCC 11299b [OCRO]
2044723
2044650
-
Gly
CCC
[ENA]
¡û
>W1810071696
PEEW01000001
Betaproteobacteria
Burkholderiales bacterium 23 [PEEW]
2832962
2832889
-
Gly
CCC
[ENA]
¡û
>W1810072110
PEFD01000001
Betaproteobacteria
Delftia sp. 60 [PEFD]
4298408
4298481
+
Gly
CCC
[ENA]
¡û
>W1810078548
PEKB02000175
Betaproteobacteria
Delftia acidovorans B15 [PEKB]
13367
13294
-
Gly
CCC
[ENA]
¡û
>C151002117
AP014568
Betaproteobacteria
Serpentinimonas raichei A1 [AP014568]
918015
917942
-
Gly
CCC
[Ensembl]
¡û
>C11107019
CP002735
Betaproteobacteria
Delftia sp. Cs1-4 [CP002735]
3023222
3023149
-
Gly
CCC
[Ensembl]
¡û
>W1511403301
JTKZ01000969
Betaproteobacteria
Delftia sp. ZNC0008 [JTKZ]
3956
3883
-
Gly
CCC
[ENA]
¡û
>W1511583326
LATT01000306
Betaproteobacteria
Delftia tsuruhatensis CM13 [LATT]
13315
13242
-
Gly
CCC
[ENA]
¡û
>W1511625822
LCZH01000025
Betaproteobacteria
Delftia tsuruhatensis MTQ3 [LCZH]
187215
187288
+
Gly
CCC
[ENA]
¡û
>W1610062777
BCNT01000008
Betaproteobacteria
Comamonas terrae [BCNT]
127212
127139
-
Gly
CCC
[ENA]
¡û
>W1610077637
BCZP01000021
Betaproteobacteria
Delftia acidovorans NBRC 14950 [BCZP]
93383
93310
-
Gly
CCC
[ENA]
¡û
>W1610599196
LFJT01000020
Betaproteobacteria
Delftia sp. JD2 [LFJT]
3276
3203
-
Gly
CCC
[ENA]
¡û
>W1610981544
LWCN01000003
Betaproteobacteria
Delftia sp. GW456-R20 [LWCN]
179315
179388
+
Gly
CCC
[ENA]
¡û
>W1710060253
BCNT01000008
Betaproteobacteria
Comamonas terrae [BCNT]
127212
127139
-
Gly
CCC
[ENA]
¡û
>W1710075275
BCZP01000021
Betaproteobacteria
Delftia acidovorans NBRC 14950 [BCZP]
93383
93310
-
Gly
CCC
[ENA]
¡û
>W1710720554
LFJT01000020
Betaproteobacteria
Delftia sp. JD2 [LFJT]
3276
3203
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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