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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.417751 (29 seq.)
>W1711050796
LRRR01000010
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
44138
44065
-
Gly
CCC
[ENA]
¡û
>W1711294758
MABH01000099
Alphaproteobacteria
Cereibacter johrii [MABH]
1762
1689
-
Gly
TCC
[ENA]
¡û
>C171064564
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
1431711
1431638
-
Gly
CCC
-
¡û
>C171101144
CP019937
Alphaproteobacteria
Ketogulonicigenium robustum SPU_B003 [CP019937]
1187914
1187987
+
Gly
CCC
-
¡û
>C171105906
CP020384
Alphaproteobacteria
Rhodovulum sp. MB263 [CP020384]
3105289
3105362
+
Gly
TCC
-
¡û
>C019251
CP000144
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP000143, CP000144]
162128
162201
+
Gly
TCC
[Ensembl]
¡û
>WENV180231962
OBCO01000044
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
209521
209448
-
Gly
TCC
[ENA]
¢þ
>WENV180362209
OBNW01069368
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
77
150
+
Gly
CCC
[ENA]
¢þ
>WENV180382139
OBOS01123590
[OBOS] marine metagenome; ENVO 00002150
131
58
-
Gly
CCC
[ENA]
¢þ
>w001259
AAAE01000138
Alphaproteobacteria
Cereibacter sphaeroides [AAAE]
15266
15196
-
Gly
TCC
[ENA]
¡û
>WENV181234742
OFEU01003429
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
467
394
-
Gly
TCC
[ENA]
¢þ
>WENV170577916
FSSH01002901
[FSSH] freshwater metagenome; drinking water
978
905
-
Gly
CCC
[ENA]
¢þ
>C181017258
CP015288
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-20 [CP015287, CP015288]
162083
162156
+
Gly
TCC
-
¡û
>W1910212594
FMJB01000055
Alphaproteobacteria
Donghicola eburneus KarMa [FMJB]
121067
121140
+
Gly
CCC
[ENA]
¡û
>C09109083
CP001151
Alphaproteobacteria
Cereibacter sphaeroides KD131 KD131; KCTC 12085 [CP001150, CP001151]
202767
202840
+
Gly
TCC
[Ensembl]
¡û
>W1910548867
FZOV01000003
Alphaproteobacteria
Cereibacter sphaeroides DSM 18937 [FZOV]
590717
590644
-
Gly
TCC
[ENA]
¡û
>W1910549867
FZQB01000003
Alphaproteobacteria
Paracoccus seriniphilus DSM 14827 [FZQB]
267017
267090
+
Gly
CCC
[ENA]
¡û
>W1810324320
PUDR01000002
Alphaproteobacteria
Pannonibacter carbonis Q4.6 [PUDR]
50947
50874
-
Gly
CCC
[ENA]
¡û
>W1810596867
QGGW01000001
Alphaproteobacteria
Roseicyclus mahoneyensis DSM 16097 [QGGW]
614745
614818
+
Gly
CCC
[ENA]
¡û
>W1810785183
QRBG01000009
Alphaproteobacteria
Cereibacter sphaeroides f. sp. denitrificans IL106 [QRBG]
151057
151130
+
Gly
TCC
[ENA]
¡û
>C11111844
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
887267
887194
-
Gly
CCC
[Ensembl]
¡û
>C11111896
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
1292984
1292911
-
Gly
CCC
[Ensembl]
¡û
>W1511348567
JRKN01000020
Alphaproteobacteria
Paracoccus halophilus JCM 14014 [JRKN]
24495
24422
-
Gly
CCC
[ENA]
¡û
>C161047288
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
1277647
1277574
-
Gly
CCC
-
¡û
>C161100014
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
1277467
1277394
-
Gly
CCC
-
¡û
>W1610891925
LRRR01000010
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
44138
44065
-
Gly
CCC
[ENA]
¡û
>W1710518979
FNEJ01000026
Alphaproteobacteria
Salipiger marinus marina [FNEJ]
74509
74436
-
Gly
CCC
[ENA]
¡û
>W1710555556
FOJO01000018
Alphaproteobacteria
Paracoccus halophilus [FOJO]
24721
24648
-
Gly
CCC
[ENA]
¡û
>W1710574000
FOXY01000002
Alphaproteobacteria
Donghicola eburneus [FOXY]
121163
121236
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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