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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.417936 (25 seq.)
>W1710899493
LNIZ01000010
Actinomycetota
Trueperella bernardiae [LNIZ]
48544
48617
+
Gly
TCC
[ENA]
¡û
>W1711184927
LWMY01000011
Actinomycetota
Trueperella sp. HMSC08H06 [LWMY]
984
911
-
Gly
TCC
[ENA]
¡û
>W1711185080
LWNB01000033
Actinomycetota
Trueperella sp. HMSC08B05 [LWNB]
959
886
-
Gly
TCC
[ENA]
¡û
>W1711621738
MPDM01000001
Actinomycetota
Boudabousia marimammalium [MPDM]
14486
14559
+
Gly
TCC
[ENA]
¡û
>W1711772065
MVGS01000014
Actinomycetota
Trueperella pyogenes [MVGS]
1854
1781
-
Gly
TCC
[ENA]
¡û
>W141284196
JALQ01000045
Actinomycetota
Trueperella pyogenes MS249 [JALQ]
2670
2597
-
Gly
TCC
[ENA]
¡û
>WENV183705490
PDWI01001658
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
29608
29679
+
Gly
TCC
[ENA]
¢þ
>C181168833
CP028833
Actinomycetota
Trueperella pyogenes Arash114 [CP028833]
475111
475038
-
Gly
TCC
-
¡û
>C181171308
CP029001
Actinomycetota
Trueperella pyogenes TP4479 [CP029001]
90151
90078
-
Gly
TCC
-
¡û
>C181171526
CP029004
Actinomycetota
Trueperella pyogenes TP-2849 [CP029004]
508477
508404
-
Gly
TCC
-
¡û
>C181212677
LS483427
Actinomycetota
Arcanobacterium haemolyticum NCTC8452 [LS483427]
1593176
1593247
+
Gly
TCC
-
¡û
>C191114688
CP033902
Actinomycetota
Trueperella pyogenes TP1 [CP033902]
394785
394858
+
Gly
TCC
-
¡û
>C191114739
CP033903
Actinomycetota
Trueperella pyogenes TP2 [CP033903]
1686260
1686333
+
Gly
TCC
-
¡û
>C191114811
CP033904
Actinomycetota
Trueperella pyogenes TP3 [CP033904]
1061880
1061807
-
Gly
TCC
-
¡û
>C191114833
CP033905
Actinomycetota
Trueperella pyogenes TP4 [CP033905]
2365096
2365169
+
Gly
TCC
-
¡û
>W1810085233
PESV01000002
Actinomycetota
Trueperella pyogenes Bu5 [PESV]
46758
46831
+
Gly
TCC
[ENA]
¡û
>W1810187940
PKHY01000010
Actinomycetota
Trueperella bernardiae UMB0116 [PKHY]
48745
48818
+
Gly
TCC
[ENA]
¡û
>W1810484093
QASM01000005
Actinomycetota
Trueperella pyogenes SH01 [QASM]
5269
5342
+
Gly
TCC
[ENA]
¡û
>C151015787
CP007003
Actinomycetota
Trueperella pyogenes TP8 [CP007003]
1540293
1540220
-
Gly
TCC
[Ensembl]
¡û
>C151026386
CP007519
Actinomycetota
Trueperella pyogenes TP6375 [CP007519]
475172
475099
-
Gly
TCC
[Ensembl]
¡û
>C151096876
CP012649
Actinomycetota
Trueperella pyogenes 2012CQ-ZSH [CP012649]
2214667
2214594
-
Gly
TCC
-
¡û
>C10100482
CP002045
Actinomycetota
Arcanobacterium haemolyticum DSM 20595 [CP002045]
618879
618808
-
Gly
TCC
[Ensembl]
¡û
>W1511351094
JRMX01000015
Actinomycetota
Arcanobacterium sp. S3PF19 [JRMX]
158501
158574
+
Gly
TCC
[ENA]
¡û
>W1610759896
LNIZ01000010
Actinomycetota
Trueperella bernardiae [LNIZ]
48544
48617
+
Gly
TCC
[ENA]
¡û
>W1710743640
LGYI01000009
Actinomycetota
Trueperella bernardiae [LGYI]
48430
48503
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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