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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.418393 (86 seq.)
>W1711186334
LWOD01000027
Actinomycetota
Dermabacter sp. HMSC06F07 [LWOD]
11736
11663
-
Gly
TCC
[ENA]
¡û
>W131218210
ATXM01000002
Actinomycetota
Bifidobacterium minimum DSM 20102 [ATXM]
78528
78601
+
Gly
TCC
[ENA]
¡û
>C171071160
CP018002
Actinomycetota
Propionibacterium freudenreichii P.UF1 [CP018002]
823731
823804
+
Gly
TCC
-
¡û
>W141000769
ADES01000026
Actinomycetota
Gardnerella vaginalis 1500E [ADES]
1446
1519
+
Gly
TCC
[ENA]
¡û
>W141000855
ADEV01000003
Actinomycetota
Gardnerella greenwoodii 00703Dmash [ADEV]
73035
72962
-
Gly
TCC
[ENA]
¡û
>W141000935
ADEW01000012
Actinomycetota
Gardnerella vaginalis 6119V5 [ADEW]
23347
23420
+
Gly
TCC
[ENA]
¡û
>WENV180462384
OBYB01001709
[OBYB] human gut metagenome; faeces
7110
7037
-
Gly
TCC
[ENA]
¢þ
>WENV180554428
OCJN01000835
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
2383
2456
+
Gly
TCC
[ENA]
¢þ
>WENV180944424
ODUC01016980
[ODUC] human metagenome; G_DNA_Supragingival plaque
2561
2634
+
Gly
TCC
[ENA]
¢þ
>WENV180976963
ODUY01372542
[ODUY] human metagenome; G_DNA_Supragingival plaque
74
147
+
Gly
TCC
[ENA]
¢þ
>WENV181218527
OFCM01002401
[OFCM] metagenome; Human gut stool
763
690
-
Gly
TCC
[ENA]
¢þ
>WENV181345181
OFMK01046471
[OFMK] human gut metagenome; human gut
538
611
+
Gly
TCC
[ENA]
¢þ
>WENV182831717
OKEG01000377
[OKEG] human gut metagenome; human gut
1667
1740
+
Gly
TCC
[ENA]
¢þ
>WENV182832524
OKEN01003394
[OKEN] human gut metagenome; human gut
505
578
+
Gly
TCC
[ENA]
¢þ
>WENV182855247
OKMY01000820
[OKMY] human gut metagenome; human gut
2343
2416
+
Gly
TCC
[ENA]
¢þ
>WENV182962568
OKWN01006148
[OKWN] human gut metagenome; stool
497
424
-
Gly
TCC
[ENA]
¢þ
>WENV183147791
OLON01002552
[OLON] human gut metagenome; faeces
7659
7586
-
Gly
TCC
[ENA]
¢þ
>WENV183214297
OLQE01004984
[OLQE] human gut metagenome; faeces
1239
1312
+
Gly
TCC
[ENA]
¢þ
>WENV183562510
OOBW01000176
[OOBW] human gut metagenome; human gut
55866
55793
-
Gly
TCC
[ENA]
¢þ
>W141400417
JDRS01000002
Actinomycetota
Dermabacter hominis 1368 [JDRS]
156647
156720
+
Gly
TCC
[ENA]
¡û
>WENV170637736
JFBN01356788
[JFBN] chicken gut metagenome; ceca of Broiler chicken
232
159
-
Gly
TCC
[ENA]
¢þ
>C181218283
LT576032
Actinomycetota
Propionibacterium freudenreichii [LT576032]
1623863
1623790
-
Gly
TCC
-
¡û
>C181218348
LT576034
Actinomycetota
Propionibacterium freudenreichii [LT576034]
1359296
1359369
+
Gly
TCC
-
¡û
>C181218415
LT576038
Actinomycetota
Propionibacterium freudenreichii [LT576038]
1614437
1614364
-
Gly
TCC
-
¡û
>C181218458
LT576042
Actinomycetota
Propionibacterium freudenreichii [LT576042]
1664768
1664695
-
Gly
TCC
-
¡û
>C181218615
LT593929
Actinomycetota
Propionibacterium freudenreichii [LT593929]
1610200
1610127
-
Gly
TCC
-
¡û
>C181219240
LT618779
Actinomycetota
Propionibacterium freudenreichii [LT618779, LT618780]
1614407
1614334
-
Gly
TCC
-
¡û
>C181219284
LT618780
Actinomycetota
Propionibacterium freudenreichii [LT618779, LT618780]
1597687
1597614
-
Gly
TCC
-
¡û
>C181219372
LT618782
Actinomycetota
Propionibacterium freudenreichii [LT618781, LT618782]
1688333
1688260
-
Gly
TCC
-
¡û
>C181219504
LT618786
Actinomycetota
Propionibacterium freudenreichii [LT618785, LT618786]
1715699
1715626
-
Gly
TCC
-
¡û
>C181219522
LT618787
Actinomycetota
Propionibacterium freudenreichii [LT618787, LT618788]
935439
935512
+
Gly
TCC
-
¡û
>C181219682
LT618790
Actinomycetota
Propionibacterium freudenreichii [LT618789, LT618790]
1738066
1737993
-
Gly
TCC
-
¡û
>C181219742
LT618792
Actinomycetota
Propionibacterium freudenreichii [LT618791, LT618792]
1066541
1066614
+
Gly
TCC
-
¡û
>C181219814
LT618793
Actinomycetota
Propionibacterium freudenreichii [LT618793, LT618794]
1595251
1595178
-
Gly
TCC
-
¡û
>W141524248
JGYX01000005
Actinomycetota
Bifidobacterium pullorum gallinarum [JGYX]
162662
162589
-
Gly
TCC
[ENA]
¡û
>W141524533
JGZD01000009
Actinomycetota
Bifidobacterium minimum [JGZD]
78584
78657
+
Gly
TCC
[ENA]
¡û
>W141524745
JGZH01000005
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum [JGZH]
4098
4171
+
Gly
TCC
[ENA]
¡û
>W141524827
JGZJ01000009
Actinomycetota
Bifidobacterium pullorum [JGZJ]
102800
102727
-
Gly
TCC
[ENA]
¡û
>W141524945
JGZM01000002
Actinomycetota
Bifidobacterium pullorum DSM 6531 = LMG 14934 [JGZM]
279920
279993
+
Gly
TCC
[ENA]
¡û
>C191143389
CP035464
Actinomycetota
Bifidobacterium pullorum subsp. gallinarum CACC 514 [CP035464]
2133834
2133761
-
Gly
TCC
-
¡û
>C191144089
CP035495
Actinomycetota
Xylanimonas allomyrinae 2JSPR-7 [CP035495]
393867
393795
-
Gly
TCC
-
¡û
>W141757548
JNXY01000031
Actinomycetota
Catenuloplanes japonicus [JNXY]
248804
248731
-
Gly
TCC
[ENA]
¡û
>W1910638939
LSLH01000001
Actinomycetota
Gardnerella vaginalis N160 [LSLH]
870695
870622
-
Gly
TCC
[ENA]
¡û
>W1911085077
NNSB01000004
Actinomycetota
Bifidobacteriaceae bacterium NR003 [NNSB]
211195
211122
-
Gly
TCC
[ENA]
¡û
>W1911180346
NQOH01000001
Actinomycetota
Bifidobacteriaceae bacterium NR047 [NQOH]
543344
543271
-
Gly
TCC
[ENA]
¡û
>W1911180390
NQOI01000002
Actinomycetota
Bifidobacteriaceae bacterium WP012 [NQOI]
206050
205977
-
Gly
TCC
[ENA]
¡û
>W1911180694
NQOQ01000001
Actinomycetota
Bifidobacteriaceae bacterium NR016 [NQOQ]
887640
887567
-
Gly
TCC
[ENA]
¡û
>W1911596057
PNGV01000001
Actinomycetota
Gardnerella greenwoodii UMB1686 [PNGV]
58632
58705
+
Gly
TCC
[ENA]
¡û
>W1810049443
PCHF01000003
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum 1595B [PCHF]
208148
208221
+
Gly
TCC
[ENA]
¡û
>W1810049569
PCHI01000002
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum 1370B [PCHI]
265873
265946
+
Gly
TCC
[ENA]
¡û
>W1810102063
PGTZ01000006
Actinomycetota
Luteimicrobium subarcticum DSM 22413 [PGTZ]
207033
207106
+
Gly
TCC
[ENA]
¡û
>W1810187323
PKHM01000005
Actinomycetota
Dermabacter hominis UMB0490 [PKHM]
3195
3122
-
Gly
TCC
[ENA]
¡û
>C151000615
AP012333
Actinomycetota
Parascardovia denticolens DSM 10105 = JCM 12538 [AP012333]
1250306
1250379
+
Gly
TCC
[Ensembl]
¡û
>C151000681
AP012334
Actinomycetota
Scardovia inopinata JCM 12537 [AP012334]
452861
452788
-
Gly
TCC
[Ensembl]
¡û
>W10111168
ADCX01000002
Actinomycetota
Scardovia inopinata F0304 [ADCX]
427674
427601
-
Gly
TCC
[ENA]
¡û
>W10112127
ADEB01000010
Actinomycetota
Parascardovia denticolens F0305 [ADEB]
47480
47407
-
Gly
TCC
[ENA]
¡û
>W1510061697
CCYN01000037
Actinomycetota
Propionibacterium freudenreichii CIRM-BIA 118 [CCYN]
81598
81525
-
Gly
TCC
[ENA]
¡û
>W1510061991
CCYU01000055
Actinomycetota
Propionibacterium freudenreichii ITG P18 [CCYU]
67035
66962
-
Gly
TCC
[ENA]
¡û
>W1510063313
CDAC01000053
Actinomycetota
Propionibacterium freudenreichii CIRM-BIA 527 [CDAC]
173222
173295
+
Gly
TCC
[ENA]
¡û
>W11114019
ADCX01000002
Actinomycetota
Scardovia inopinata F0304 [ADCX]
427674
427601
-
Gly
TCC
[ENA]
¡û
>W11115104
ADEB01000010
Actinomycetota
Parascardovia denticolens F0305 [ADEB]
47480
47407
-
Gly
TCC
[ENA]
¡û
>W11141915
AEON01000001
Actinomycetota
Parascardovia denticolens DSM 10105 [AEON]
664179
664106
-
Gly
TCC
[ENA]
¡û
>C161039612
CP012117
Actinomycetota
Dermabacter vaginalis AD1-86 [CP012117]
1921158
1921231
+
Gly
TCC
[Ensembl]
¡û
>C161108187
LN997841
Actinomycetota
Propionibacterium freudenreichii subsp. shermanii [LN997841]
810756
810829
+
Gly
TCC
[Ensembl]
¡û
>W121023116
AGZS01000002
Actinomycetota
Scardovia wiggsiae F0424 [AGZS]
29091
29164
+
Gly
TCC
[ENA]
¡û
>W121077617
AKCI01000001
Actinomycetota
Scardovia wiggsiae F0424 [AKCI]
937484
937557
+
Gly
TCC
[ENA]
¡û
>W121084568
AKII01000017
Actinomycetota
Parascardovia denticolens IPLA 20019 [AKII]
280144
280217
+
Gly
TCC
[ENA]
¡û
>W1610052384
BBHW01000012
Actinomycetota
Catenuloplanes japonicus JCM 9106 [BBHW]
2781
2708
-
Gly
TCC
[ENA]
¡û
>W1610052441
BBHX01000018
Actinomycetota
Catenuloplanes crispus JCM 9312 [BBHX]
2371
2298
-
Gly
TCC
[ENA]
¡û
>W1610052488
BBHY01000045
Actinomycetota
Catenuloplanes niger JCM 9533 [BBHY]
2928
3001
+
Gly
TCC
[ENA]
¡û
>W1610052529
BBHZ01000043
Actinomycetota
Catenuloplanes indicus JCM 9534 [BBHZ]
132
59
-
Gly
TCC
[ENA]
¡û
>W1610052584
BBIA01000652
Actinomycetota
Catenuloplanes atrovinosus JCM 9535 [BBIA]
220
293
+
Gly
TCC
[ENA]
¡û
>W1610052602
BBIB01000114
Actinomycetota
Catenuloplanes nepalensis JCM 9536 [BBIB]
1317
1244
-
Gly
TCC
[ENA]
¡û
>W1610052650
BBIC01000090
Actinomycetota
Catenuloplanes castaneus JCM 9537 [BBIC]
1389
1462
+
Gly
TCC
[ENA]
¡û
>W1610519215
JDUA01000004
Actinomycetota
Bifidobacterium minimum DSM 20102 [JDUA]
68274
68347
+
Gly
TCC
[ENA]
¡û
>W1610519809
JDUN01000001
Actinomycetota
Bifidobacterium pullorum DSM 20670 [JDUN]
160289
160216
-
Gly
TCC
[ENA]
¡û
>W1710048762
BBHW01000012
Actinomycetota
Catenuloplanes japonicus JCM 9106 [BBHW]
2781
2708
-
Gly
TCC
[ENA]
¡û
>W1710048819
BBHX01000018
Actinomycetota
Catenuloplanes crispus JCM 9312 [BBHX]
2371
2298
-
Gly
TCC
[ENA]
¡û
>W1710048866
BBHY01000045
Actinomycetota
Catenuloplanes niger JCM 9533 [BBHY]
2928
3001
+
Gly
TCC
[ENA]
¡û
>W1710048907
BBHZ01000043
Actinomycetota
Catenuloplanes indicus JCM 9534 [BBHZ]
132
59
-
Gly
TCC
[ENA]
¡û
>W1710048962
BBIA01000652
Actinomycetota
Catenuloplanes atrovinosus JCM 9535 [BBIA]
220
293
+
Gly
TCC
[ENA]
¡û
>W1710048980
BBIB01000114
Actinomycetota
Catenuloplanes nepalensis JCM 9536 [BBIB]
1317
1244
-
Gly
TCC
[ENA]
¡û
>W1710049028
BBIC01000090
Actinomycetota
Catenuloplanes castaneus JCM 9537 [BBIC]
1389
1462
+
Gly
TCC
[ENA]
¡û
>W1710552662
FOGZ01000012
Actinomycetota
Propionibacterium cyclohexanicum [FOGZ]
66312
66239
-
Gly
TCC
[ENA]
¡û
>W1710614670
JDUA01000004
Actinomycetota
Bifidobacterium minimum DSM 20102 [JDUA]
68274
68347
+
Gly
TCC
[ENA]
¡û
>W1710615222
JDUN01000001
Actinomycetota
Bifidobacterium pullorum DSM 20670 [JDUN]
160289
160216
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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