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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.41896 (30 seq.)
>W1710871129
LMLB01000001
Alphaproteobacteria
Sphingomonas sp. Leaf33 [LMLB]
2297056
2297145
+
Ser
CGA
[ENA]
¡û
>W1711089887
LTAB01000009
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
82189
82100
-
Ser
CGA
[ENA]
¡û
>W1711250030
LYMJ01000009
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
82189
82100
-
Ser
CGA
[ENA]
¡û
>W1712084229
NHRH01000138
Alphaproteobacteria
Sphingomonas sp. CDS-1 [NHRH]
6371
6460
+
Ser
CGA
[ENA]
¡û
>C171019716
CP013070
Alphaproteobacteria
Sphingobium indicum B90A [CP013070]
2150214
2150125
-
Ser
CGA
-
¡û
>W131213847
ATTI01000001
Alphaproteobacteria
Sphingomonas phyllosphaerae 5.2 [ATTI]
3116591
3116502
-
Ser
CGA
[ENA]
¡û
>W141285101
JANF02000073
Alphaproteobacteria
Sphingobium indicum F2 [JANF]
3368
3457
+
Ser
CGA
[ENA]
¡û
>WENV183636308
OOKD01000027
[OOKD] human gut metagenome; Skin biopsy
3559
3470
-
Ser
CGA
[ENA]
¢þ
>W141400533
JDRU02000215
Alphaproteobacteria
Sphingomonas sp. BHC-A [JDRU]
3297
3386
+
Ser
CGA
[ENA]
¡û
>W141484887
JFYY01000010
Alphaproteobacteria
Sphingomonas paucimobilis [JFYY]
7273
7362
+
Ser
CGA
[ENA]
¡û
>W141726148
JNAC01000067
Alphaproteobacteria
Sphingobium sp. DC-2 [JNAC]
48769
48680
-
Ser
CGA
[ENA]
¡û
>W1911494771
OBMI01000002
Alphaproteobacteria
Sphingomonas guangdongensis CGMCC 1.12672 [OBMI]
577197
577108
-
Ser
CGA
[ENA]
¡û
>W1911688335
QLJL01000001
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt1_0416 [QLJL]
143575
143664
+
Ser
CGA
[ENA]
¡û
>C151074546
CP010954
Alphaproteobacteria
Sphingobium sp. YBL2 [CP010954]
2638947
2639036
+
Ser
CGA
[Ensembl]
¡û
>W10126767
AEDK01000002
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
171697
171786
+
Ser
CGA
[ENA]
¡û
>C10111656
AP010803
Alphaproteobacteria
Sphingobium indicum UT26S [AP010803, AP010804]
699358
699447
+
Ser
CGA
[Ensembl]
¡û
>W1510757087
JACV01000035
Alphaproteobacteria
Sphingobium baderi LL03 [JACV]
190463
190552
+
Ser
CGA
[ENA]
¡û
>W11134028
AEDK01000002
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
171697
171786
+
Ser
CGA
[ENA]
¡û
>W11161375
AFGG01000010
Alphaproteobacteria
Sphingomonas sp. S17 [AFGG]
126953
127042
+
Ser
CGA
[ENA]
¡û
>C161003342
CP005083
Alphaproteobacteria
Sphingobium sp. TKS [CP005083, CP005084]
779925
780014
+
Ser
CGA
[Ensembl]
¡û
>C161092717
CP015986
Alphaproteobacteria
Sphingobium sp. EP60837 [CP015986, CP015987]
1720455
1720544
+
Ser
CGA
[Ensembl]
¡û
>W1610076915
BCZC01000193
Alphaproteobacteria
Sphingobium chlorophenolicum NBRC 16172 [BCZC]
3312
3401
+
Ser
CGA
[ENA]
¡û
>W1610076966
BCZD01000029
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
3379
3468
+
Ser
CGA
[ENA]
¡û
>W1610609157
LFVX01000015
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
12818
12907
+
Ser
CGA
[ENA]
¡û
>W1610733475
LMLB01000001
Alphaproteobacteria
Sphingomonas sp. Leaf33 [LMLB]
2297056
2297145
+
Ser
CGA
[ENA]
¡û
>W1610924231
LTAB01000009
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
82189
82100
-
Ser
CGA
[ENA]
¡û
>W1611016912
LYMJ01000009
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
82189
82100
-
Ser
CGA
[ENA]
¡û
>W1710074604
BCZC01000193
Alphaproteobacteria
Sphingobium chlorophenolicum NBRC 16172 [BCZC]
3312
3401
+
Ser
CGA
[ENA]
¡û
>W1710074655
BCZD01000029
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
3379
3468
+
Ser
CGA
[ENA]
¡û
>W1710730444
LFVX01000015
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
12818
12907
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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