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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.419491 (6 seq.)
>W1710909666
LNQR01000142
Nitrospirota
Candidatus Magnetominusculus xianensis HCH-1 [LNQR]
3655
3729
+
Gly
GCC
[ENA]
¡û
>W141696054
JMFO01000005
Nitrospirota
Candidatus Magnetobacterium casensis sp. MYR-1 [JMFO]
185270
185344
+
Gly
GCC
[ENA]
¡û
>W2011643737
SNNQ01001053
Nitrospirota
Nitrospirales bacterium LBB_01 [SNNQ]
1151
1225
+
Gly
GCC
[ENA]
¡û
>C211077654
CP049016
Nitrospirota
Nitrospirales bacterium LBB_01 [CP049016]
2904297
2904371
+
Gly
GCC
-
¡û
>W1511563803
LACI01002092
Nitrospirota
Candidatus Magnetobacterium bavaricum [LACI]
2226
2300
+
Gly
GCC
[ENA]
¡û
>W1610768025
LNQR01000142
Nitrospirota
Candidatus Magnetominusculus xianensis HCH-1 [LNQR]
3655
3729
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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