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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.420734 (27 seq.)
>W1711093377
LTEY01000015
Actinomycetota
Kocuria sp. HMSC066H03 [LTEY]
80597
80670
+
Gly
TCC
[ENA]
¡û
>C08005778
AP009152
Actinomycetota
Kocuria rhizophila DC2201 [AP009152]
1216799
1216726
-
Gly
TCC
[Ensembl]
¡û
>WENV170561763
CZCA01027172
[CZCA] anaerobic digester metagenome; anaerobic digester
525
596
+
Gly
TCC
[ENA]
¢þ
>C181055936
CP022039
Actinomycetota
Kocuria rhizophila FDAARGOS_302 [CP022039]
610666
610737
+
Gly
TCC
-
¡û
>C181187325
CP030039
Actinomycetota
Kocuria sp. BT304 [CP030039]
1330782
1330709
-
Gly
TCC
-
¡û
>C191210993
LR134409
Actinomycetota
Kocuria rhizophila NCTC8340 [LR134409]
1603264
1603335
+
Gly
TCC
-
¡û
>W1910182073
BJMO01000019
Actinomycetota
Sinomonas atrocyanea NBRC 12956 [BJMO]
34445
34516
+
Gly
TCC
[ENA]
¡û
>W1910183618
BJNW01000011
Actinomycetota
Kocuria varians NBRC 15358 [BJNW]
56962
56891
-
Gly
TCC
[ENA]
¡û
>W1911114690
NOIT01000007
Actinomycetota
Kocuria carniphila CCM 132 [NOIT]
99279
99208
-
Gly
TCC
[ENA]
¡û
>W1911149943
NPGE01000001
Actinomycetota
Kocuria varians 80 [NPGE]
1910904
1910975
+
Gly
TCC
[ENA]
¡û
>W1911243211
NSGI01000007
Actinomycetota
Kocuria sp. WRN011 [NSGI]
162991
163062
+
Gly
TCC
[ENA]
¡û
>W1911582720
PHOA01000003
Actinomycetota
Kocuria tytonicola DSM 104133 [PHOA]
16389
16460
+
Gly
TCC
[ENA]
¡û
>W1810189415
PKJA01000001
Actinomycetota
Kocuria rhizophila UMB0131 [PKJA]
1718133
1718060
-
Gly
TCC
[ENA]
¡û
>W1810197072
PNJG01000062
Actinomycetota
Kocuria tytonis 442 [PNJG]
14532
14605
+
Gly
TCC
[ENA]
¡û
>W1810200199
PNRK01000011
Actinomycetota
Kocuria rhizophila D2 [PNRK]
71596
71523
-
Gly
TCC
[ENA]
¡û
>W1511317247
JPWX01000752
Actinomycetota
Kocuria rhizophila RF [JPWX]
127
54
-
Gly
TCC
[ENA]
¡û
>W1511489638
JWTC01000001
Actinomycetota
Kocuria rhizophila TPW45 [JWTC]
70159
70086
-
Gly
TCC
[ENA]
¡û
>W1511681629
LFIY01000003
Actinomycetota
Kocuria rhizophila 14ASP [LFIY]
18694
18767
+
Gly
TCC
[ENA]
¡û
>W11163678
AFID01000001
Actinomycetota
Kocuria rhizophila P7-4 [AFID]
106755
106682
-
Gly
TCC
[ENA]
¡û
>C161073232
CP014518
Actinomycetota
Sinomonas atrocyanea KCTC 3377 [CP014518]
2527348
2527277
-
Gly
TCC
[Ensembl]
¡û
>W121070973
AJXN01000033
Actinomycetota
Kocuria atrinae C3-8 [AJXN]
17435
17508
+
Gly
TCC
[ENA]
¡û
>W1610112355
CZJU01000112
Actinomycetota
Kocuria salsicia [CZJU]
10255
10184
-
Gly
TCC
[ENA]
¡û
>W1610112438
CZJW01000034
Actinomycetota
Kocuria rhizophila [CZJW]
76596
76523
-
Gly
TCC
[ENA]
¡û
>W1610112485
CZJX01000054
Actinomycetota
Kocuria varians [CZJX]
44524
44453
-
Gly
TCC
[ENA]
¡û
>W1710115059
CZJU01000112
Actinomycetota
Kocuria salsicia [CZJU]
10255
10184
-
Gly
TCC
[ENA]
¡û
>W1710115142
CZJW01000034
Actinomycetota
Kocuria rhizophila [CZJW]
76596
76523
-
Gly
TCC
[ENA]
¡û
>W1710115189
CZJX01000054
Actinomycetota
Kocuria varians [CZJX]
44524
44453
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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