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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.420970 (32 seq.)
>W131161186
AQXL01000020
Bacillota
Effusibacillus pohliae DSM 22757 [AQXL]
1063
989
-
Gln
TTG
[ENA]
¡û
>W131161193
AQXL01000036
Bacillota
Effusibacillus pohliae DSM 22757 [AQXL]
21
95
+
Gln
TTG
[ENA]
¡û
>W131161211
AQXL01000078
Bacillota
Effusibacillus pohliae DSM 22757 [AQXL]
2072
1998
-
Gln
TTG
[ENA]
¡û
>W131161238
AQXL01000122
Bacillota
Effusibacillus pohliae DSM 22757 [AQXL]
127
201
+
Gln
TTG
[ENA]
¡û
>W1711391608
MELW01000096
Bacillota
Alicyclobacillus sp. RIFOXYA1_FULL_53_8 [MELW]
9316
9242
-
Gln
TTG
[ENA]
¡û
>C171119003
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
1828831
1828905
+
Gln
TTG
-
¡û
>C171119048
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
2861127
2861201
+
Gln
TTG
-
¡û
>C171119088
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3262669
3262743
+
Gln
TTG
-
¡û
>C171119108
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3315652
3315726
+
Gln
TTG
-
¡û
>C171119119
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3436722
3436796
+
Gln
TTG
-
¡û
>C171119130
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3817636
3817710
+
Gln
TTG
-
¡û
>C171119146
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
4717541
4717467
-
Gln
TTG
-
¡û
>C171119171
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
19340
19266
-
Gln
TTG
-
¡û
>W141150883
AXAR01000001
Bacillota
Alicyclobacillus pomorum DSM 14955 [AXAR]
146500
146574
+
Gln
TTG
[ENA]
¡û
>WENV170573959
FLYL01053910
[FLYL] hot springs metagenome; Sediment
61
135
+
Gln
TTG
[ENA]
¢þ
>C181070228
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
1342241
1342315
+
Gln
TTG
-
¡û
>C181070279
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
4329144
4329070
-
Gln
TTG
-
¡û
>C181070316
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
3452756
3452682
-
Gln
TTG
-
¡û
>C181070351
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
3147931
3147857
-
Gln
TTG
-
¡û
>C181070367
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
2929460
2929386
-
Gln
TTG
-
¡û
>C181070378
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
2608509
2608435
-
Gln
TTG
-
¡û
>W1910020566
BDUF01000059
Bacillota
Effusibacillus lacus skLN1 [BDUF]
75374
75448
+
Gln
TTG
[ENA]
¡û
>W1910020594
BDUF01000086
Bacillota
Effusibacillus lacus skLN1 [BDUF]
135
209
+
Gln
TTG
[ENA]
¡û
>W1910020617
BDUF01000101
Bacillota
Effusibacillus lacus skLN1 [BDUF]
1349
1275
-
Gln
TTG
[ENA]
¡û
>W1810596170
QGGL01000002
Bacillota
Tumebacillus permanentifrigoris DSM 18773 [QGGL]
120176
120102
-
Gln
TTG
[ENA]
¡û
>W1810596222
QGGL01000009
Bacillota
Tumebacillus permanentifrigoris DSM 18773 [QGGL]
95303
95229
-
Gln
TTG
[ENA]
¡û
>W1810596249
QGGL01000014
Bacillota
Tumebacillus permanentifrigoris DSM 18773 [QGGL]
2829
2903
+
Gln
TTG
[ENA]
¡û
>W1810596282
QGGL01000019
Bacillota
Tumebacillus permanentifrigoris DSM 18773 [QGGL]
2241
2167
-
Gln
TTG
[ENA]
¡û
>W1810596334
QGGL01000042
Bacillota
Tumebacillus permanentifrigoris DSM 18773 [QGGL]
2457
2383
-
Gln
TTG
[ENA]
¡û
>W1810596355
QGGL01000043
Bacillota
Tumebacillus permanentifrigoris DSM 18773 [QGGL]
1436
1362
-
Gln
TTG
[ENA]
¡û
>W1810596368
QGGL01000050
Bacillota
Tumebacillus permanentifrigoris DSM 18773 [QGGL]
1140
1066
-
Gln
TTG
[ENA]
¡û
>W1510089536
CECI01000007
Bacillota
Risungbinella massiliensis GD1 [CECI]
548653
548579
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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