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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.42104 (95 seq.)
>W1711005775
LQNU01000065
Bacteroidota
Myroides marinus [LQNU]
150846
150934
+
Leu
TAA
[ENA]
¡û
>W1711047377
LROZ01000001
Bacteroidota
Myroides odoratus [LROZ]
238822
238910
+
Leu
TAA
[ENA]
¡û
>W1711047379
LROZ01000001
Bacteroidota
Myroides odoratus [LROZ]
250204
250292
+
Leu
TAA
[ENA]
¡û
>W1711047380
LROZ01000001
Bacteroidota
Myroides odoratus [LROZ]
250915
251003
+
Leu
TAA
[ENA]
¡û
>W1711047381
LROZ01000001
Bacteroidota
Myroides odoratus [LROZ]
251626
251714
+
Leu
TAA
[ENA]
¡û
>W1711385093
MEDR01000172
Bacteroidota
Chryseobacterium sp. SCN 40-13 [MEDR]
3057
3145
+
Leu
TAA
[ENA]
¡û
>W1711503300
MKTM01000008
Bacteroidota
Flavobacterium sp. 40-81 [MKTM]
119312
119400
+
Leu
TAA
[ENA]
¡û
>W1711503301
MKTM01000008
Bacteroidota
Flavobacterium sp. 40-81 [MKTM]
121942
122030
+
Leu
TAA
[ENA]
¡û
>W1711621194
MPCW01000001
Bacteroidota
Flavobacterium sp. MedPE-SWcel [MPCW]
208293
208207
-
Leu
TAA
[ENA]
¡û
>W131046239
AMSG01000018
Bacteroidota
Galbibacter marinus ck-I2-15 [AMSG]
39236
39322
+
Leu
TAA
[ENA]
¡û
>WENV180045851
MPLT02023117
[MPLT] marine metagenome; 70 m water sample filtered on 0.2 um supor filter
5435
5521
+
Leu
TAA
[ENA]
¡û
>W141008107
AGZJ01000050
Bacteroidota
Myroides odoratus CIP 103059 [AGZJ]
120846
120758
-
Leu
TAA
[ENA]
¡û
>W141008109
AGZJ01000050
Bacteroidota
Myroides odoratus CIP 103059 [AGZJ]
107568
107480
-
Leu
TAA
[ENA]
¡û
>W141008110
AGZJ01000050
Bacteroidota
Myroides odoratus CIP 103059 [AGZJ]
106856
106768
-
Leu
TAA
[ENA]
¡û
>WENV180385067
OBOZ01006415
[OBOZ] marine metagenome; Sea Water
216
130
-
Leu
TAA
[ENA]
¡û
>WENV180397189
OBPX01020858
[OBPX] marine metagenome; vv
105
19
-
Leu
TAA
[ENA]
¡û
>WENV180397495
OBPY01013365
[OBPY] marine metagenome; Mesotrophic water
461
375
-
Leu
TAA
[ENA]
¡û
>WENV180593488
OCOX01053124
[OCOX] marine metagenome; ENVO:00002010
272
358
+
Leu
TAA
[ENA]
¡û
>WENV181120612
OEFK01017198
[OEFK] marine metagenome; ENVO:00002010 seawater
129
43
-
Leu
TAA
[ENA]
¡û
>W141200481
AYXY01000023
Bacteroidota
Zhouia amylolytica AD3 [AYXY]
64521
64607
+
Leu
TAA
[ENA]
¡û
>WENV183698254
OZSS01000217
[OZSS] metagenome; Seawater sample
1136
1050
-
Leu
TAA
[ENA]
¡û
>WENV183746256
POVV01019550
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
763
677
-
Leu
TAA
[ENA]
¡û
>WENV183802818
PVBE010790078
[PVBE] marine metagenome; water
798
712
-
Leu
TAA
[ENA]
¡û
>WENV170422037
CEUN01126182
[CEUN] marine metagenome genome assembly TARA_124_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1275
1189
-
Leu
TAA
[ENA]
¡û
>WENV170513690
CEWA01023328
[CEWA] marine metagenome genome assembly TARA_038_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1875
1789
-
Leu
TAA
[ENA]
¡û
>WENV170586816
FUFK010446057
[FUFK] metagenome; unknown
974
888
-
Leu
TAA
[ENA]
¡û
>WENV170603496
FUWD010312971
[FUWD] metagenome; unknown
215
303
+
Leu
TAA
[ENA]
¡û
>WENV170618911
FUWD012991850
[FUWD] metagenome; unknown
128
40
-
Leu
TAA
[ENA]
¡û
>WENV170620751
FUWD013038334
[FUWD] metagenome; unknown
1062
1150
+
Leu
TAA
[ENA]
¡û
>WENV170626616
FUWD013226800
[FUWD] metagenome; unknown
1112
1024
-
Leu
TAA
[ENA]
¡û
>WENV170628894
FUWD013255513
[FUWD] metagenome; unknown
1062
1150
+
Leu
TAA
[ENA]
¡û
>WENV170728225
LULE01014155
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
216
302
+
Leu
TAA
[ENA]
¡û
>WENV170732236
LULI01025158
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
814
728
-
Leu
TAA
[ENA]
¡û
>WENV170734433
LULK01005828
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
852
938
+
Leu
TAA
[ENA]
¡û
>WENV170765052
LWDU01034820
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
29906
29818
-
Leu
TAA
[ENA]
¡û
>WENV170864326
MDTB01103716
[MDTB] marine metagenome; seawater
3401
3315
-
Leu
TAA
[ENA]
¡û
>WENV170875847
MDTC01029650
[MDTC] marine metagenome; seawater
26337
26249
-
Leu
TAA
[ENA]
¡û
>WENV170901072
MDTD01164299
[MDTD] marine metagenome; seawater
5640
5554
-
Leu
TAA
[ENA]
¡û
>WENV170906479
MDTE01039077
[MDTE] marine metagenome; seawater
14
100
+
Leu
TAA
[ENA]
¡û
>WENV170942933
MDTG01387187
[MDTG] marine metagenome; seawater
2579
2493
-
Leu
TAA
[ENA]
¡û
>WENV171002843
NHNJ01181353
[NHNJ] marine metagenome; surface waters at 20 m depth at the end of the Scripps Institution of Oceanography (SIO) pier
417
329
-
Leu
TAA
[ENA]
¡û
>W2010537319
JAAQQU010000098
Bacteroidota
Flavobacterium sp. J49 [JAAQQU]
215735
215649
-
Leu
TAA
[ENA]
¡û
>W2010713172
JACHTC010000002
Bacteroidota
Myroides sp. WP-1 [JACHTC]
189734
189648
-
Leu
TAA
[ENA]
¡û
>W2010713174
JACHTC010000002
Bacteroidota
Myroides sp. WP-1 [JACHTC]
179508
179422
-
Leu
TAA
[ENA]
¡û
>W2010713175
JACHTC010000002
Bacteroidota
Myroides sp. WP-1 [JACHTC]
178802
178716
-
Leu
TAA
[ENA]
¡û
>W2010713249
JACHTD010000001
Bacteroidota
Myroides sp. NP-2 [JACHTD]
328866
328780
-
Leu
TAA
[ENA]
¡û
>W2010713251
JACHTD010000001
Bacteroidota
Myroides sp. NP-2 [JACHTD]
323757
323671
-
Leu
TAA
[ENA]
¡û
>W2010713252
JACHTD010000001
Bacteroidota
Myroides sp. NP-2 [JACHTD]
323046
322960
-
Leu
TAA
[ENA]
¡û
>W2011831714
UGQL01000002
Bacteroidota
Myroides odoratus NCTC11179 [UGQL]
1266375
1266289
-
Leu
TAA
[ENA]
¡û
>W2011831716
UGQL01000002
Bacteroidota
Myroides odoratus NCTC11179 [UGQL]
1256060
1255974
-
Leu
TAA
[ENA]
¡û
>W2011831717
UGQL01000002
Bacteroidota
Myroides odoratus NCTC11179 [UGQL]
1255348
1255262
-
Leu
TAA
[ENA]
¡û
>W2011831829
UGQN01000001
Bacteroidota
Myroides odoratus NCTC11036 [UGQN]
1991665
1991579
-
Leu
TAA
[ENA]
¡û
>W2011831831
UGQN01000001
Bacteroidota
Myroides odoratus NCTC11036 [UGQN]
1978387
1978301
-
Leu
TAA
[ENA]
¡û
>W2011831832
UGQN01000001
Bacteroidota
Myroides odoratus NCTC11036 [UGQN]
1977675
1977589
-
Leu
TAA
[ENA]
¡û
>W2012379056
WMJY01000002
Bacteroidota
Myroides pelagicus SM1T [WMJY]
219334
219248
-
Leu
TAA
[ENA]
¡û
>W2110027485
BMJE01000006
Bacteroidota
Flavobacterium suaedae CGMCC 1.15461 [BMJE]
36997
37083
+
Leu
TAA
[ENA]
¡û
>W2110263134
JACTAB010000002
Bacteroidota
Flavobacterium buctense B7 [JACTAB]
32585
32671
+
Leu
TAA
[ENA]
¡û
>W2110337727
JADMKY010000092
Bacteroidota
Flavobacterium sp. J49 [JADMKY]
215735
215649
-
Leu
TAA
[ENA]
¡û
>W2110613347
JAHKRA010000003
Bacteroidota
Flavobacterium sp. NKUCC04_CG [JAHKRA]
96009
96095
+
Leu
TAA
[ENA]
¡û
>W2110613348
JAHKRA010000003
Bacteroidota
Flavobacterium sp. NKUCC04_CG [JAHKRA]
96709
96795
+
Leu
TAA
[ENA]
¡û
>C201295375
CP058278
Bacteroidota
Flavobacterium sp. P2-65 [CP058278]
1351930
1351844
-
Leu
TAA
-
¡û
>C211241917
CP068107
Bacteroidota
Myroides odoratus FDAARGOS_1132 [CP068107]
3135936
3136022
+
Leu
TAA
-
¡û
>C211241919
CP068107
Bacteroidota
Myroides odoratus FDAARGOS_1132 [CP068107]
3146251
3146337
+
Leu
TAA
-
¡û
>C211241920
CP068107
Bacteroidota
Myroides odoratus FDAARGOS_1132 [CP068107]
3146963
3147049
+
Leu
TAA
-
¡û
>C211242049
CP068108
Bacteroidota
Myroides odoratus FDAARGOS_1131 [CP068108]
345670
345584
-
Leu
TAA
-
¡û
>C211242051
CP068108
Bacteroidota
Myroides odoratus FDAARGOS_1131 [CP068108]
332392
332306
-
Leu
TAA
-
¡û
>C211242052
CP068108
Bacteroidota
Myroides odoratus FDAARGOS_1131 [CP068108]
331680
331594
-
Leu
TAA
-
¡û
>C211378807
CP080429
Bacteroidota
Flavobacterium sp. WSW3-B6 [CP080429]
376563
376477
-
Leu
TAA
-
¡û
>C241048905
CP039934
Bacteroidota
Myroides fluvii CJ210 [CP039934]
779036
779122
+
Leu
TAA
-
¡û
>C241048907
CP039934
Bacteroidota
Myroides fluvii CJ210 [CP039934]
790269
790355
+
Leu
TAA
-
¡û
>C241048908
CP039934
Bacteroidota
Myroides fluvii CJ210 [CP039934]
790962
791048
+
Leu
TAA
-
¡û
>C241173441
CP058364
Bacteroidota
Galbibacter sp. BG1 [CP058364]
1833301
1833387
+
Leu
TAA
-
¡û
>C241262863
CP125972
Bacteroidota
Myroides sp. mNGS23_01 [CP125972]
1266851
1266937
+
Leu
TAA
-
¡û
>C241262865
CP125972
Bacteroidota
Myroides sp. mNGS23_01 [CP125972]
1277155
1277241
+
Leu
TAA
-
¡û
>C241262866
CP125972
Bacteroidota
Myroides sp. mNGS23_01 [CP125972]
1277864
1277950
+
Leu
TAA
-
¡û
>C241353136
CP139975
Bacteroidota
Myroides odoratus HAMBI_1923 [CP139975]
3907401
3907487
+
Leu
TAA
-
¡û
>C241353138
CP139975
Bacteroidota
Myroides odoratus HAMBI_1923 [CP139975]
3920679
3920765
+
Leu
TAA
-
¡û
>C241353139
CP139975
Bacteroidota
Myroides odoratus HAMBI_1923 [CP139975]
3921391
3921477
+
Leu
TAA
-
¡û
>W2310019668
BRVP01000001
Bacteroidota
Neptunitalea chrysea AM327 [BRVP]
124463
124549
+
Leu
TAA
[ENA]
¡û
>W2310019669
BRVP01000001
Bacteroidota
Neptunitalea chrysea AM327 [BRVP]
124638
124724
+
Leu
TAA
[ENA]
¡û
>W1511481042
JWJO01000001
Bacteroidota
Myroides marinus L41 [JWJO]
20813
20901
+
Leu
TAA
[ENA]
¡û
>W121034507
AHKQ01000027
Bacteroidota
Myroides odoratus DSM 2801 [AHKQ]
155476
155388
-
Leu
TAA
[ENA]
¡û
>W121034509
AHKQ01000027
Bacteroidota
Myroides odoratus DSM 2801 [AHKQ]
142198
142110
-
Leu
TAA
[ENA]
¡û
>W121034510
AHKQ01000027
Bacteroidota
Myroides odoratus DSM 2801 [AHKQ]
141486
141398
-
Leu
TAA
[ENA]
¡û
>W121068190
AJUG01000001
Bacteroidota
Galbibacter orientalis DSM 19592 [AJUG]
1428961
1428875
-
Leu
TAA
[ENA]
¡û
>W1610856425
LQNU01000065
Bacteroidota
Myroides marinus [LQNU]
150846
150934
+
Leu
TAA
[ENA]
¡û
>W1610888506
LROZ01000001
Bacteroidota
Myroides odoratus [LROZ]
238822
238910
+
Leu
TAA
[ENA]
¡û
>W1610888508
LROZ01000001
Bacteroidota
Myroides odoratus [LROZ]
250204
250292
+
Leu
TAA
[ENA]
¡û
>W1610888509
LROZ01000001
Bacteroidota
Myroides odoratus [LROZ]
250915
251003
+
Leu
TAA
[ENA]
¡û
>W1610888510
LROZ01000001
Bacteroidota
Myroides odoratus [LROZ]
251626
251714
+
Leu
TAA
[ENA]
¡û
>W1710549183
FOEI01000002
Bacteroidota
Flavobacterium urocaniciphilum [FOEI]
207152
207064
-
Leu
TAA
[ENA]
¡û
>W1710549184
FOEI01000002
Bacteroidota
Flavobacterium urocaniciphilum [FOEI]
207036
206948
-
Leu
TAA
[ENA]
¡û
>W1710576801
FPAG01000011
Bacteroidota
Zhouia amylolytica [FPAG]
135
49
-
Leu
TAA
[ENA]
¡û
>W1710578226
FPBK01000005
Bacteroidota
Pustulibacterium marinum [FPBK]
169278
169190
-
Leu
TAA
[ENA]
¡û
>W1710578227
FPBK01000005
Bacteroidota
Pustulibacterium marinum [FPBK]
169112
169024
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK