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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.421076 (11 seq.)
>A171000331
CP001014
Thermoproteota
Pyrobaculum neutrophilum V24Sta [CP001014]
1259654
1259726
+
Ala
GGC
-
¡û
>A171002936
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
189805
189879
+
Ala
GGC
-
¡û
>A171007126
FN869859
Thermoproteota
Thermoproteus tenax Kra 1 [FN869859]
144008
144080
+
Ala
GGC
-
¡û
>A179000306
CP003098
Thermoproteota
Pyrobaculum ferrireducens 1860 [CP003098]
417714
417805
+
Ala
GGC
-
¡û
>At0234
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
1839080
1839009
-
Ala
GGC
[Ensembl]
¡û
>At0360
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
695709
695638
-
Ala
GGC
[Ensembl]
¡û
>WENV170574206
FLYM01013723
[FLYM] hot springs metagenome; Sediment
379
453
+
Ala
GGC
[ENA]
¢þ
>W1910595845
JZWT01000055
Thermoproteota
Thermoproteus sp. AZ2 [JZWT]
7870
7943
+
Ala
GGC
[ENA]
¡û
>W1911075118
NMUE01000035
Thermoproteota
Pyrobaculum aerophilum YKB31 [NMUE]
4199
4125
-
Ala
GGC
[ENA]
¡û
>W1911075138
NMUF01000015
Thermoproteota
Pyrobaculum aerophilum YKB32 [NMUF]
47678
47604
-
Ala
GGC
[ENA]
¡û
>W1610000622
ABIO01000002
Thermoproteota
Pyrobaculum neutrophilum V24Sta [ABIO]
118215
118287
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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