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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.421752 (23 seq.)
>W131182359
ARQH01000036
Mycoplasmatota
Mycoplasmopsis synoviae ATCC 25204 [ARQH]
252
179
-
Gly
TCC
[ENA]
¡û
>W131214888
ATUN01000010
Mycoplasmatota
Mesomycoplasma moatsii ATCC 27625 [ATUN]
9256
9329
+
Gly
TCC
[ENA]
¡û
>W131221265
AUAH01000007
Mycoplasmatota
Mycoplasmopsis arginini ATCC 23838 [AUAH]
7934
7861
-
Gly
TCC
[ENA]
¡û
>C014126
AE017245
Mycoplasmatota
Mycoplasmopsis synoviae 53 [AE017245]
365821
365894
+
Gly
TCC
[Ensembl]
¡û
>WENV180296230
OBJA01000101
[OBJA] soil metagenome; sediment, water from around vicinity
23132
23059
-
Gly
TCC
[ENA]
¢þ
>W141280424
JAHB01000001
Mycoplasmatota
Mycoplasmopsis cricetuli ATCC 35279 [JAHB]
117960
118033
+
Gly
TCC
[ENA]
¡û
>WENV170726798
LSQX01394377
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
19174
19247
+
Gly
TCC
[ENA]
¢þ
>C181049478
CP021129
Mycoplasmatota
Mycoplasmopsis synoviae MS-H [CP021129]
321829
321756
-
Gly
TCC
-
¡û
>C191182990
CP040825
Mycoplasmatota
Mycoplasma nasistruthionis 2F1A [CP040825]
7216
7289
+
Gly
TCC
-
¡û
>C191189327
KP704286
Mycoplasmatota
Mycoplasmopsis synoviae MS-H [KP704286]
29301
29228
-
Gly
TCC
-
¡û
>C191218111
LR214951
Mycoplasmatota
Mesomycoplasma neurolyticum NCTC10166 [LR214951]
820288
820361
+
Gly
TCC
-
¡û
>C191218388
LR215022
Mycoplasmatota
Mycoplasmopsis californica NCTC10189 [LR215022]
788598
788671
+
Gly
TCC
-
¡û
>C191218566
LR215036
Mycoplasmatota
Mycoplasmopsis citelli NCTC10181 [LR215036]
815381
815308
-
Gly
TCC
-
¡û
>C191218613
LR215039
Mycoplasmatota
Mycoplasmopsis columboralis NCTC10179 [LR215039]
550188
550261
+
Gly
TCC
-
¡û
>C191224893
LS991953
Mycoplasmatota
Mycoplasmopsis synoviae NCTC10124 [LS991953]
356764
356691
-
Gly
TCC
-
¡û
>W141558836
JHWG01000010
Mycoplasmatota
Mesomycoplasma molare ATCC 27746 [JHWG]
2724
2797
+
Gly
TCC
[ENA]
¡û
>W141560651
JHXU01000003
Mycoplasmatota
Mycoplasma elephantis ATCC 51980 [JHXU]
30178
30105
-
Gly
TCC
[ENA]
¡û
>W141731307
JNIZ01000003
Mycoplasmatota
Mycoplasmopsis sturni DSM 22021 [JNIZ]
136910
136983
+
Gly
TCC
[ENA]
¡û
>W141732320
JNJY01000007
Mycoplasmatota
[Mycoplasma] collis ATCC 35278 [JNJY]
42174
42101
-
Gly
TCC
[ENA]
¡û
>W141732364
JNJZ01000010
Mycoplasmatota
Mycoplasmopsis columboralis ATCC 29258 [JNJZ]
13681
13608
-
Gly
TCC
[ENA]
¡û
>W141807448
JPOK01000005
Mycoplasmatota
Mycoplasma buteonis [JPOK]
154540
154467
-
Gly
TCC
[ENA]
¡û
>W141807455
JPOK01000012
Mycoplasmatota
Mycoplasma buteonis [JPOK]
14825
14898
+
Gly
TCC
[ENA]
¡û
>C151076504
CP011096
Mycoplasmatota
Mycoplasmopsis synoviae ATCC 25204 WVU1853 [CP011096]
394876
394949
+
Gly
TCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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