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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.423180 (54 seq.)
>W131044112
AMQH01000003
Bacillota
Clostridium tunisiense TJ [AMQH]
11554
11481
-
Cys
GCA
[ENA]
¡û
>W131044119
AMQH01000006
Bacillota
Clostridium tunisiense TJ [AMQH]
442756
442683
-
Cys
GCA
[ENA]
¡û
>W131156465
AQPT01000141
Bacillota
Clostridium botulinum CFSAN002367 [AQPT]
35449
35376
-
Cys
GCA
[ENA]
¡û
>W131156510
AQPV01000058
Bacillota
Clostridium botulinum CFSAN002369 [AQPV]
25533
25460
-
Cys
GCA
[ENA]
¡û
>W1711791510
MWIZ01000007
Bacillota
Clostridium botulinum [MWIZ]
53103
53176
+
Cys
GCA
[ENA]
¡û
>W1711792023
MWJH01000002
Bacillota
Clostridium botulinum [MWJH]
755133
755060
-
Cys
GCA
[ENA]
¡û
>W1711792127
MWJJ01000003
Bacillota
Clostridium sporogenes [MWJJ]
1264
1337
+
Cys
GCA
[ENA]
¡û
>C171021864
CP013243
Bacillota
Clostridium sporogenes CDC_1632 [CP013243]
2264360
2264287
-
Cys
GCA
-
¡û
>C005199
AM412317
Bacillota
Clostridium botulinum A str. ATCC 3502 [AM412317]
3345044
3344971
-
Cys
GCA
[Ensembl]
¡û
>W141082922
AUPA01000006
Bacillota
Clostridium sp. BL8 [AUPA]
78060
78133
+
Cys
GCA
[ENA]
¡û
>W141082935
AUPA01000040
Bacillota
Clostridium sp. BL8 [AUPA]
20430
20357
-
Cys
GCA
[ENA]
¡û
>WENV180972273
ODUU01367230
[ODUU] human metagenome; G_DNA_Stool
215
142
-
Cys
GCA
[ENA]
¢þ
>W08008167
ABKW02000003
Bacillota
Clostridium sporogenes ATCC 15579 [ABKW]
435847
435777
-
Cys
GCA
[ENA]
¡û
>WENV181801659
OGSB01005063
[OGSB] human gut metagenome; fecal sample 5 from infant 3
845
772
-
Cys
GCA
[ENA]
¢þ
>WENV181802072
OGSC01002355
[OGSC] human gut metagenome; fecal sample 8 from infant 5
1026
1099
+
Cys
GCA
[ENA]
¢þ
>WENV181810727
OGSV01002321
[OGSV] human gut metagenome; fecal sample 4 from infant 3
630
703
+
Cys
GCA
[ENA]
¢þ
>WENV181867330
OGWV01087938
[OGWV] human gut metagenome; faeces
444
517
+
Cys
GCA
[ENA]
¢þ
>WENV181938679
OGYW01028382
[OGYW] human gut metagenome; faeces
133
206
+
Cys
GCA
[ENA]
¢þ
>W141213136
AZRS01000029
Bacillota
Clostridium botulinum CDC54088 [AZRS]
19356
19283
-
Cys
GCA
[ENA]
¡û
>C08002506
CP000726
Bacillota
Clostridium botulinum A str. ATCC 19397 [CP000726]
3321033
3320963
-
Cys
GCA
[Ensembl]
¡û
>C08002743
CP000727
Bacillota
Clostridium botulinum A str. Hall [CP000727]
3218140
3218070
-
Cys
GCA
[Ensembl]
¡û
>W141239838
CAEV01000019
Bacillota
Clostridium senegalense JC122 [CAEV]
10608
10535
-
Cys
GCA
[ENA]
¡û
>W141239897
CAEV01000175
Bacillota
Clostridium senegalense JC122 [CAEV]
101
28
-
Cys
GCA
[ENA]
¡û
>WENV182961033
OKWK01000090
[OKWK] human gut metagenome; stool
1400
1473
+
Cys
GCA
[ENA]
¢þ
>WENV182961181
OKWK01000270
[OKWK] human gut metagenome; stool
34545
34472
-
Cys
GCA
[ENA]
¢þ
>WENV183191584
OLPR01016377
[OLPR] human gut metagenome; faeces
2050
2123
+
Cys
GCA
[ENA]
¢þ
>C181013438
CP013701
Bacillota
Clostridium sporogenes AM1195 [CP013701]
76337
76410
+
Cys
GCA
-
¡û
>C181013662
CP013843
Bacillota
Clostridium botulinum B742 [CP013843]
3359627
3359554
-
Cys
GCA
-
¡û
>C181016389
CP014174
Bacillota
Clostridium botulinum B609 [CP014174]
3444345
3444272
-
Cys
GCA
-
¡û
>C181016470
CP014219
Bacillota
Clostridium botulinum B515 [CP014219]
3413741
3413668
-
Cys
GCA
-
¡û
>C181159539
CP027777
Bacillota
Clostridium botulinum Mfbjulcb8 [CP027777]
500556
500629
+
Cys
GCA
-
¡û
>C181159646
CP027778
Bacillota
Clostridium botulinum Mfbjulcb6 [CP027778]
2935667
2935594
-
Cys
GCA
-
¡û
>C181159711
CP027779
Bacillota
Clostridium botulinum RF5 [CP027779]
947764
947691
-
Cys
GCA
-
¡û
>C181159730
CP027780
Bacillota
Clostridium botulinum Mfbjulcb3 [CP027780]
76337
76410
+
Cys
GCA
-
¡û
>C181159827
CP027781
Bacillota
Clostridium botulinum MAP 5 [CP027781]
2810604
2810531
-
Cys
GCA
-
¡û
>C181168917
CP028842
Bacillota
Clostridium botulinum DFPST0029 [CP028842]
3316095
3316022
-
Cys
GCA
-
¡û
>C181168999
CP028859
Bacillota
Clostridium botulinum CFSAN064329 [CP028859]
3360816
3360743
-
Cys
GCA
-
¡û
>C191010737
CP013705
Bacillota
Clostridium botulinum F160 [CP013705]
721796
721869
+
Cys
GCA
-
¡û
>W1910635842
LNSX01000002
Bacillota
Clostridium botulinum CDC_67086 [LNSX]
365575
365648
+
Cys
GCA
[ENA]
¡û
>C151003189
AP014696
Bacillota
Clostridium botulinum 111 [AP014696]
3367022
3366949
-
Cys
GCA
-
¡û
>W1511511219
JXSU01000006
Bacillota
Clostridium botulinum B2 450 [JXSU]
1033
1106
+
Cys
GCA
[ENA]
¡û
>W1511544466
JZJQ01000016
Bacillota
Clostridium sporogenes 88-0163 [JZJQ]
1033
1106
+
Cys
GCA
[ENA]
¡û
>W1511565910
LAGF01000415
Bacillota
Clostridium sporogenes CDC23284 [LAGF]
1217
1290
+
Cys
GCA
[ENA]
¡û
>W1610026069
AUYU01000009
Bacillota
Clostridium botulinum B2 128 [AUYU]
37622
37549
-
Cys
GCA
[ENA]
¡û
>W1610026420
AUZA01000007
Bacillota
Clostridium botulinum A2B7 92 [AUZA]
1156
1229
+
Cys
GCA
[ENA]
¡û
>W1610601464
LFOO01000028
Bacillota
Clostridium botulinum [LFOO]
38488
38415
-
Cys
GCA
[ENA]
¡û
>W1610602471
LFPH01000001
Bacillota
Clostridium sporogenes botulinum [LFPH]
397303
397230
-
Cys
GCA
[ENA]
¡û
>W1610602610
LFPJ01000003
Bacillota
Clostridium sporogenes botulinum [LFPJ]
1225
1298
+
Cys
GCA
[ENA]
¡û
>W1710022118
AUYU01000009
Bacillota
Clostridium botulinum B2 128 [AUYU]
37622
37549
-
Cys
GCA
[ENA]
¡û
>W1710022469
AUZA01000007
Bacillota
Clostridium botulinum A2B7 92 [AUZA]
1156
1229
+
Cys
GCA
[ENA]
¡û
>W1710722980
LFOO01000028
Bacillota
Clostridium botulinum [LFOO]
38488
38415
-
Cys
GCA
[ENA]
¡û
>W1710723987
LFPH01000001
Bacillota
Clostridium sporogenes botulinum [LFPH]
397303
397230
-
Cys
GCA
[ENA]
¡û
>W1710724126
LFPJ01000003
Bacillota
Clostridium sporogenes botulinum [LFPJ]
1225
1298
+
Cys
GCA
[ENA]
¡û
>W1710754626
LHUL01000007
Bacillota
Clostridium botulinum [LHUL]
52933
53006
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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