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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.42366 (33 seq.)
>W131109040
APHJ01000017
Bacteroidota
Gillisia sp. CAL575 [APHJ]
65570
65658
+
Leu
TAA
[ENA]
¡û
>W131231195
AUIG01000044
Bacteroidota
Salinimicrobium xinjiangense DSM 19287 [AUIG]
829
741
-
Leu
TAA
[ENA]
¡û
>W1711696273
MSJR01000007
Bacteroidota
Salegentibacter sediminis K5023 [MSJR]
21671
21585
-
Leu
TAA
[ENA]
¡û
>C171074058
CP018153
Bacteroidota
Christiangramia salexigens LPB0144 [CP018153]
1759822
1759734
-
Leu
TAA
-
¡û
>WENV170308172
CESL01007256
[CESL] marine metagenome genome assembly TARA_102_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
481
569
+
Leu
TAA
[ENA]
¡û
>WENV170383136
CETX01077905
[CETX] marine metagenome genome assembly TARA_138_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
294
382
+
Leu
TAA
[ENA]
¡û
>WENV170444704
CEUX01206797
[CEUX] marine metagenome genome assembly TARA_123_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1486
1398
-
Leu
TAA
[ENA]
¡û
>C181161925
CP028136
Bacteroidota
Christiangramia fulva SH35 [CP028136]
2004521
2004607
+
Leu
TAA
-
¡û
>C191182956
CP040812
Bacteroidota
Antarcticibacterium flavum KCTC 52984 [CP040812]
3067468
3067554
+
Leu
TAA
-
¡û
>W141818608
JQLP01000005
Bacteroidota
Gillisia sp. Hel_I_29 [JQLP]
771645
771731
+
Leu
TAA
[ENA]
¡û
>W1911496113
OCMF01000001
Bacteroidota
Salinimicrobium sediminis CGMCC 1.12641 [OCMF]
414455
414369
-
Leu
TAA
[ENA]
¡û
>W2010572380
JAAVJR010000006
Bacteroidota
Salinimicrobium sp. CDJ15-91 [JAAVJR]
72028
71940
-
Leu
TAA
[ENA]
¡û
>W2011157017
OCMF01000001
Bacteroidota
Salinimicrobium sediminis CGMCC 1.12641 [OCMF]
414455
414369
-
Leu
TAA
[ENA]
¡û
>W2011375543
RBLG01000001
Bacteroidota
Gillisia mitskevichiae DSM 19839 [RBLG]
1153716
1153802
+
Leu
TAA
[ENA]
¡û
>W2011486993
RRZV01000013
Bacteroidota
Flavobacteriaceae bacterium 14752 [RRZV]
72237
72149
-
Leu
TAA
[ENA]
¡û
>W2011604225
SJDV01000001
Bacteroidota
Gramella sp. KN1008 [SJDV]
473051
473137
+
Leu
TAA
[ENA]
¡û
>W2011681012
SRSL01000001
Bacteroidota
Gramella sp. BOM4 [SRSL]
353432
353346
-
Leu
TAA
[ENA]
¡û
>W2012042340
VISE01000001
Bacteroidota
Gillisia sp. Hel_I_86 [VISE]
476814
476728
-
Leu
TAA
[ENA]
¡û
>W2012063405
VJVW01000002
Bacteroidota
Gramella aestuarii BS12 [VJVW]
382467
382379
-
Leu
TAA
[ENA]
¡û
>C201113139
CP042476
Bacteroidota
Antarcticibacterium sp. PAMC 28998 [CP042476]
2166950
2166864
-
Leu
TAA
-
¡û
>C211173284
CP063204
Bacteroidota
Zunongwangia sp. SCSIO 43204 [CP063204]
1715273
1715359
+
Leu
TAA
-
¡û
>C211317338
CP073015
Bacteroidota
Flavobacterium sp. CS20 [CP073015]
1723163
1723077
-
Leu
TAA
-
¡û
>C231118501
CP069620
Bacteroidota
Salinimicrobium sp. HN-2-9-2 [CP069620]
1122791
1122705
-
Leu
TAA
-
¡û
>C231258280
CP089211
Bacteroidota
Sinomicrobium kalidii HD2P242 [CP089211]
3386162
3386076
-
Leu
TAA
-
¡û
>C231289094
CP091036
Bacteroidota
Antarcticibacterium sp. 1MA-6-2 [CP091036]
4082283
4082369
+
Leu
TAA
-
¡û
>C231564967
CP115159
Bacteroidota
Zunongwangia sp. HGR-M22 [CP115159]
3372900
3372814
-
Leu
TAA
-
¡û
>C231565029
CP115161
Bacteroidota
Zunongwangia sp. HRR-M8 [CP115161]
714050
714136
+
Leu
TAA
-
¡û
>C10114649
CP001650
Bacteroidota
Zunongwangia profunda SM-A87 SMA-87 [CP001650]
4018570
4018482
-
Leu
TAA
[Ensembl]
¡û
>W121034532
AHKR01000011
Bacteroidota
Gillisia limnaea DSM 15749 [AHKR]
165512
165426
-
Leu
TAA
[ENA]
¡û
>W121063877
AJLT01000019
Bacteroidota
Gillisia marina CBA3202 [AJLT]
219424
219336
-
Leu
TAA
[ENA]
¡û
>W1710521278
FNGG01000009
Bacteroidota
Salinimicrobium catena [FNGG]
75658
75572
-
Leu
TAA
[ENA]
¡û
>W1710538082
FNUG01000009
Bacteroidota
Salinimicrobium catena [FNUG]
5388
5474
+
Leu
TAA
[ENA]
¡û
>W1710557269
FOKV01000001
Bacteroidota
Zunongwangia mangrovi [FOKV]
1241211
1241299
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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