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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.424364 (84 seq.)
>W1711282182
LZMU01000019
Gammaproteobacteria
Haemophilus influenzae [LZMU]
243993
243920
-
Trp
CCA
[ENA]
¡û
>W1711657965
MQMH01000012
Gammaproteobacteria
Haemophilus influenzae [MQMH]
43294
43221
-
Trp
CCA
[ENA]
¡û
>w025272
AAZJ01000029
Gammaproteobacteria
Haemophilus influenzae 22.4-21 [AAZJ]
5036
5111
+
Trp
CCA
[ENA]
¡û
>WENV180745897
ODHM01000043
[ODHM] human metagenome; G_DNA_Buccal mucosa
22055
21982
-
Trp
CCA
[ENA]
¢þ
>WENV180912713
ODSM01000109
[ODSM] human metagenome; G_DNA_Buccal mucosa
2153
2080
-
Trp
CCA
[ENA]
¢þ
>WENV180974571
ODUX01012779
[ODUX] human metagenome; G_DNA_Buccal mucosa
509
582
+
Trp
CCA
[ENA]
¢þ
>WENV180992218
ODVP01000100
[ODVP] human metagenome; G_DNA_Buccal mucosa
12607
12680
+
Trp
CCA
[ENA]
¢þ
>WENV181122063
OEFL01061518
[OEFL] human metagenome; G_DNA_Supragingival plaque
209
136
-
Trp
CCA
[ENA]
¢þ
>WENV182412132
OIFS01000055
[OIFS] human gut metagenome; stool
90371
90298
-
Trp
CCA
[ENA]
¢þ
>W09111387
ABWW01000002
Gammaproteobacteria
Haemophilus influenzae 6P18H1 [ABWW]
222647
222720
+
Trp
CCA
[ENA]
¡û
>C181042334
CP020008
Gammaproteobacteria
Haemophilus influenzae 5P28H1 [CP020008]
1634594
1634521
-
Trp
CCA
-
¡û
>C181042386
CP020009
Gammaproteobacteria
Haemophilus influenzae 5P54H1 [CP020009]
1551178
1551251
+
Trp
CCA
-
¡û
>C181197419
CP031237
Gammaproteobacteria
Haemophilus influenzae M12125 [CP031237]
872812
872885
+
Trp
CCA
-
¡û
>C181210541
LS483392
Gammaproteobacteria
Haemophilus influenzae NCTC11931 [LS483392]
1571208
1571135
-
Trp
CCA
-
¡û
>C191078203
CP031686
Gammaproteobacteria
Haemophilus influenzae P642-4396 [CP031686]
1448580
1448507
-
Trp
CCA
-
¡û
>C191078262
CP031687
Gammaproteobacteria
Haemophilus influenzae P641-4342 [CP031687]
1400755
1400682
-
Trp
CCA
-
¡û
>W1910832270
MZGZ01000037
Gammaproteobacteria
Haemophilus influenzae 99P1H1 [MZGZ]
53706
53779
+
Trp
CCA
[ENA]
¡û
>W1910832318
MZHA01000173
Gammaproteobacteria
Haemophilus influenzae 99P15H1 [MZHA]
3669
3596
-
Trp
CCA
[ENA]
¡û
>W1910833154
MZHQ01000070
Gammaproteobacteria
Haemophilus influenzae 84P36H1 [MZHQ]
7355
7282
-
Trp
CCA
[ENA]
¡û
>W1910833625
MZIA01000005
Gammaproteobacteria
Haemophilus influenzae 75P47H1 [MZIA]
15248
15321
+
Trp
CCA
[ENA]
¡û
>W1910834179
MZIK01000035
Gammaproteobacteria
Haemophilus influenzae 6P5H [MZIK]
23167
23094
-
Trp
CCA
[ENA]
¡û
>W1910835856
MZJR01000002
Gammaproteobacteria
Haemophilus influenzae 47P36H1 [MZJR]
25113
25040
-
Trp
CCA
[ENA]
¡û
>W1910836739
MZKI01000005
Gammaproteobacteria
Haemophilus influenzae 27P39H1 [MZKI]
14883
14810
-
Trp
CCA
[ENA]
¡û
>W1910836837
MZKJ01000056
Gammaproteobacteria
Haemophilus influenzae 27P12H6 [MZKJ]
123621
123548
-
Trp
CCA
[ENA]
¡û
>W1910836960
MZKM01000020
Gammaproteobacteria
Haemophilus influenzae 19P94H1 [MZKM]
22600
22527
-
Trp
CCA
[ENA]
¡û
>W1910837212
MZKQ01000056
Gammaproteobacteria
Haemophilus influenzae 19P115H1 [MZKQ]
43116
43043
-
Trp
CCA
[ENA]
¡û
>W1910837327
MZKT01000012
Gammaproteobacteria
Haemophilus influenzae 14P46H1 [MZKT]
117243
117170
-
Trp
CCA
[ENA]
¡û
>W1910837390
MZKU01000039
Gammaproteobacteria
Haemophilus influenzae 14P41H1 [MZKU]
16896
16969
+
Trp
CCA
[ENA]
¡û
>W1910837886
MZLE01000004
Gammaproteobacteria
Haemophilus influenzae 138P2H1 [MZLE]
23753
23680
-
Trp
CCA
[ENA]
¡û
>W1910838046
MZLH01000011
Gammaproteobacteria
Haemophilus influenzae 133P41H1 [MZLH]
20770
20697
-
Trp
CCA
[ENA]
¡û
>W1910838093
MZLI01000002
Gammaproteobacteria
Haemophilus influenzae 12P56H2 [MZLI]
25836
25763
-
Trp
CCA
[ENA]
¡û
>W1910838521
MZLQ01000020
Gammaproteobacteria
Haemophilus influenzae 122P4H1 [MZLQ]
11189
11116
-
Trp
CCA
[ENA]
¡û
>W1910838588
MZLR01000028
Gammaproteobacteria
Haemophilus influenzae 122P13H1 [MZLR]
16118
16191
+
Trp
CCA
[ENA]
¡û
>W1910838893
MZLX01000044
Gammaproteobacteria
Haemophilus influenzae 111P80H1 [MZLX]
4448
4521
+
Trp
CCA
[ENA]
¡û
>W1910839058
MZMA01000042
Gammaproteobacteria
Haemophilus influenzae 106P7H1 [MZMA]
23231
23158
-
Trp
CCA
[ENA]
¡û
>W1910839211
MZMD01000028
Gammaproteobacteria
Haemophilus influenzae 103P89H1 [MZMD]
23243
23170
-
Trp
CCA
[ENA]
¡û
>W1910839244
MZME01000024
Gammaproteobacteria
Haemophilus influenzae 103P85H1 [MZME]
13495
13568
+
Trp
CCA
[ENA]
¡û
>W1910839539
MZMJ01000074
Gammaproteobacteria
Haemophilus influenzae 101P47H1 [MZMJ]
29867
29794
-
Trp
CCA
[ENA]
¡û
>W1910839567
MZMK01000027
Gammaproteobacteria
Haemophilus influenzae 101P36H1 [MZMK]
97246
97173
-
Trp
CCA
[ENA]
¡û
>W1910875499
NDZQ01000110
Gammaproteobacteria
Haemophilus influenzae 126P16H1 [NDZQ]
6439
6366
-
Trp
CCA
[ENA]
¡û
>W1910875516
NDZQ01000251
Gammaproteobacteria
Haemophilus influenzae 126P16H1 [NDZQ]
1429
1356
-
Trp
CCA
[ENA]
¡û
>W1910875572
NDZR01000745
Gammaproteobacteria
Haemophilus influenzae 126P21H1 [NDZR]
1301
1228
-
Trp
CCA
[ENA]
¡û
>W1910875857
NDZX01000025
Gammaproteobacteria
Haemophilus influenzae 12P95H1 [NDZX]
55539
55612
+
Trp
CCA
[ENA]
¡û
>W1910876012
NEAA01000058
Gammaproteobacteria
Haemophilus influenzae 135P16H1 [NEAA]
22596
22523
-
Trp
CCA
[ENA]
¡û
>W1910876874
NEAR01000037
Gammaproteobacteria
Haemophilus influenzae 27P38H1 [NEAR]
18264
18337
+
Trp
CCA
[ENA]
¡û
>W1910877369
NEBB01000006
Gammaproteobacteria
Haemophilus influenzae 37P4H1 [NEBB]
24516
24443
-
Trp
CCA
[ENA]
¡û
>W1910877450
NEBC01000041
Gammaproteobacteria
Haemophilus influenzae 37P6H2 [NEBC]
15289
15362
+
Trp
CCA
[ENA]
¡û
>W1910878095
NEBO01000052
Gammaproteobacteria
Haemophilus influenzae 46P8H1 [NEBO]
15010
14937
-
Trp
CCA
[ENA]
¡û
>W1910878215
NEBR01000030
Gammaproteobacteria
Haemophilus influenzae 48P115H1 [NEBR]
16118
16191
+
Trp
CCA
[ENA]
¡û
>W1910878988
NECG01000068
Gammaproteobacteria
Haemophilus influenzae 66P36H1 [NECG]
126565
126638
+
Trp
CCA
[ENA]
¡û
>W1910879478
NECQ01000035
Gammaproteobacteria
Haemophilus influenzae 84P23H6 [NECQ]
56657
56730
+
Trp
CCA
[ENA]
¡û
>W1910879542
NECR01000039
Gammaproteobacteria
Haemophilus influenzae 84P28H1 [NECR]
117010
116937
-
Trp
CCA
[ENA]
¡û
>W1910879589
NECS01000063
Gammaproteobacteria
Haemophilus influenzae 84P37H2 [NECS]
201681
201754
+
Trp
CCA
[ENA]
¡û
>W1810015493
BGMU01000006
Gammaproteobacteria
Haemophilus influenzae 16 [BGMU]
13582
13655
+
Trp
CCA
[ENA]
¡û
>W1810015581
BGMW01000003
Gammaproteobacteria
Haemophilus influenzae 18 [BGMW]
21957
21884
-
Trp
CCA
[ENA]
¡û
>W1810772036
QQHS01000003
Gammaproteobacteria
Haemophilus influenzae M05825 [QQHS]
23782
23709
-
Trp
CCA
[ENA]
¡û
>W1810773042
QQIM01000002
Gammaproteobacteria
Haemophilus influenzae M10315 [QQIM]
13639
13712
+
Trp
CCA
[ENA]
¡û
>W1810773523
QQIV01000003
Gammaproteobacteria
Haemophilus influenzae M17128 [QQIV]
14257
14330
+
Trp
CCA
[ENA]
¡û
>W1810773670
QQIY01000002
Gammaproteobacteria
Haemophilus haemolyticus M19201 [QQIY]
155092
155165
+
Trp
CCA
[ENA]
¡û
>W1810774139
QQJH01000002
Gammaproteobacteria
Haemophilus influenzae M10768 [QQJH]
253328
253255
-
Trp
CCA
[ENA]
¡û
>W1810774930
QQJW01000006
Gammaproteobacteria
Haemophilus haemolyticus M26161 [QQJW]
121721
121648
-
Trp
CCA
[ENA]
¡û
>W1810775301
QQKD01000010
Gammaproteobacteria
Haemophilus haemolyticus M26176 [QQKD]
64357
64284
-
Trp
CCA
[ENA]
¡û
>W1810775678
QQKL01000002
Gammaproteobacteria
Haemophilus influenzae M21366 [QQKL]
202861
202934
+
Trp
CCA
[ENA]
¡û
>W1810777455
QQLU01000001
Gammaproteobacteria
Haemophilus influenzae M07561 [QQLU]
22690
22617
-
Trp
CCA
[ENA]
¡û
>W1810778275
QQMK01000002
Gammaproteobacteria
Haemophilus haemolyticus M19197 [QQMK]
185021
185094
+
Trp
CCA
[ENA]
¡û
>W1810908636
QVIW01000002
Gammaproteobacteria
Haemophilus influenzae P611-7680 [QVIW]
170130
170203
+
Trp
CCA
[ENA]
¡û
>W1810911531
QVLA01000006
Gammaproteobacteria
Haemophilus influenzae P605-7719 [QVLA]
3901
3974
+
Trp
CCA
[ENA]
¡û
>W1810911565
QVLB01000002
Gammaproteobacteria
Haemophilus influenzae P604-7629 [QVLB]
3901
3974
+
Trp
CCA
[ENA]
¡û
>C151036493
CP008740
Gammaproteobacteria
Haemophilus influenzae 2019 [CP008740]
504852
504779
-
Trp
CCA
[Ensembl]
¡û
>W1511448579
JUZZ01000038
Gammaproteobacteria
Haemophilus influenzae 614_HPAR [JUZZ]
17667
17740
+
Trp
CCA
[ENA]
¡û
>W1511506298
JXLZ01000025
Gammaproteobacteria
Haemophilus influenzae Hi359 [JXLZ]
4208
4281
+
Trp
CCA
[ENA]
¡û
>W1511506385
JXMB01000015
Gammaproteobacteria
Haemophilus influenzae Hi378 [JXMB]
88751
88678
-
Trp
CCA
[ENA]
¡û
>W1511506507
JXMD01000031
Gammaproteobacteria
Haemophilus influenzae Hi394 [JXMD]
4755
4828
+
Trp
CCA
[ENA]
¡û
>W1511506558
JXME01000031
Gammaproteobacteria
Haemophilus influenzae Hi403 [JXME]
4319
4392
+
Trp
CCA
[ENA]
¡û
>W1511621818
LCVK01000037
Gammaproteobacteria
Haemophilus influenzae 2019 [LCVK]
23372
23299
-
Trp
CCA
[ENA]
¡û
>W1610294694
FFIH01000002
Gammaproteobacteria
Haemophilus influenzae [FFIH]
27957
27884
-
Trp
CCA
[ENA]
¡û
>W1610295047
FFIO01000002
Gammaproteobacteria
Haemophilus influenzae [FFIO]
9865
9938
+
Trp
CCA
[ENA]
¡û
>W1610295701
FFJB01000001
Gammaproteobacteria
Haemophilus influenzae [FFJB]
22650
22577
-
Trp
CCA
[ENA]
¡û
>W1610296060
FFJI01000002
Gammaproteobacteria
Haemophilus influenzae [FFJI]
9865
9938
+
Trp
CCA
[ENA]
¡û
>W1611041393
LZMU01000019
Gammaproteobacteria
Haemophilus influenzae [LZMU]
243993
243920
-
Trp
CCA
[ENA]
¡û
>W1710295328
FFIH01000002
Gammaproteobacteria
Haemophilus influenzae [FFIH]
27957
27884
-
Trp
CCA
[ENA]
¡û
>W1710295681
FFIO01000002
Gammaproteobacteria
Haemophilus influenzae [FFIO]
9865
9938
+
Trp
CCA
[ENA]
¡û
>W1710296335
FFJB01000001
Gammaproteobacteria
Haemophilus influenzae [FFJB]
22650
22577
-
Trp
CCA
[ENA]
¡û
>W1710296694
FFJI01000002
Gammaproteobacteria
Haemophilus influenzae [FFJI]
9865
9938
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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