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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.42526 (118 seq.)
>C171057586
CP017125
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae M1601 [CP017125]
519578
519666
+
Leu
TAA
-
¡û
>C171088926
CP019061
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae zly1309F [CP019061]
519431
519519
+
Leu
TAA
-
¡û
>W131058741
ANFU01000006
Mycoplasmatota
Mycoplasma feriruminatoris G5847 [ANFU]
19708
19620
-
Leu
TAA
[ENA]
¡û
>W131061548
ANIV01000016
Mycoplasmatota
Mycoplasma mycoides subsp. capri PG3 [ANIV]
14384
14296
-
Leu
TAA
[ENA]
¡û
>C013250
CP000123
Mycoplasmatota
Mycoplasma capricolum subsp. capricolum ATCC 27343 [CP000123]
497057
497145
+
Leu
TAA
[Ensembl]
¡û
>C013878
BX293980
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides SC str. PG1 [BX293980]
649680
649592
-
Leu
TAA
[Ensembl]
¡û
>w025285
AAZK01000001
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides LC str. GM12 [AAZK]
470411
470501
+
Leu
TAA
[ENA]
¡û
>W141276858
JAED01000004
Mycoplasmatota
Mesoplasma seiffertii ATCC 49495 [JAED]
321248
321160
-
Leu
TAA
[ENA]
¡û
>W141450941
JFAE01000010
Mycoplasmatota
Mycoplasma mycoides subsp. capri PG3 [JFAE]
25056
25144
+
Leu
TAA
[ENA]
¡û
>W141455513
JFDO01000016
Mycoplasmatota
Mycoplasma capricolum subsp. capricolum 14232 [JFDO]
27763
27851
+
Leu
TAA
[ENA]
¡û
>C181109521
CP024965
Mycoplasmatota
Williamsoniiplasma somnilux PYAN-1 [CP024965]
361250
361338
+
Leu
TAA
-
¡û
>C191217984
LR214938
Mycoplasmatota
Metamycoplasma salivarium NCTC10113 [LR214938]
497575
497663
+
Leu
TAA
-
¡û
>C191224085
LS483500
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483500]
616651
616563
-
Leu
TAA
-
¡û
>C191224115
LS483501
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483501]
618738
618650
-
Leu
TAA
-
¡û
>C191224145
LS483502
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483502]
617022
616934
-
Leu
TAA
-
¡û
>C191224175
LS483503
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483503]
608108
608020
-
Leu
TAA
-
¡û
>C191224204
LS483504
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483504]
617247
617159
-
Leu
TAA
-
¡û
>C191224234
LS483505
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483505]
619666
619578
-
Leu
TAA
-
¡û
>C191224264
LS483506
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483506]
612655
612567
-
Leu
TAA
-
¡û
>C191224294
LS483507
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483507]
612104
612016
-
Leu
TAA
-
¡û
>C191224322
LS483508
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483508]
608996
608908
-
Leu
TAA
-
¡û
>C191224352
LS483509
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483509]
615457
615369
-
Leu
TAA
-
¡û
>C191224381
LS483510
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483510]
612138
612050
-
Leu
TAA
-
¡û
>C191224411
LS483511
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483511]
613169
613081
-
Leu
TAA
-
¡û
>C191224441
LS483512
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483512]
620439
620351
-
Leu
TAA
-
¡û
>C191224471
LS483513
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483513]
618224
618136
-
Leu
TAA
-
¡û
>C191224500
LS483514
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483514]
620306
620218
-
Leu
TAA
-
¡û
>C191224530
LS483515
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483515]
620439
620351
-
Leu
TAA
-
¡û
>C191224560
LS483516
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483516]
610995
610907
-
Leu
TAA
-
¡û
>C191224590
LS483517
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483517]
613940
613852
-
Leu
TAA
-
¡û
>C191224620
LS483518
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483518]
620310
620222
-
Leu
TAA
-
¡û
>C191224649
LS483519
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483519]
617819
617731
-
Leu
TAA
-
¡û
>W141700874
JMJI01000025
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 99108 [JMJI]
1556
1468
-
Leu
TAA
[ENA]
¡û
>W1910597445
LATJ01000044
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides PO-67 [LATJ]
25221
25309
+
Leu
TAA
[ENA]
¡û
>W1910598113
LAUU01000008
Mycoplasmatota
Mycoplasma leachii 06049 [LAUU]
138195
138107
-
Leu
TAA
[ENA]
¡û
>W1910598129
LAUV01000018
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides B345/93 [LAUV]
25221
25309
+
Leu
TAA
[ENA]
¡û
>W1910598160
LAUW01000022
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides C425/93 [LAUW]
25221
25309
+
Leu
TAA
[ENA]
¡û
>W1910598201
LAUX01000159
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides KH3J [LAUX]
11
99
+
Leu
TAA
[ENA]
¡û
>W1910598223
LAUY01000044
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides str. Gemu Goffa [LAUY]
25220
25308
+
Leu
TAA
[ENA]
¡û
>SRA1014777
SRR023845.309857
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
96
184
+
Leu
TAA
[SRA]
>C151015551
CP006959
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 87001 [CP006959]
519619
519707
+
Leu
TAA
[Ensembl]
¡û
>C151064933
CP010267
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides izsam_mm5713 [CP010267]
651882
651794
-
Leu
TAA
[Ensembl]
¡û
>C151094679
CP012387
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [CP012387]
620439
620351
-
Leu
TAA
-
¡û
>C151102618
LM995445
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 9231-Aboms [LM995445]
519465
519553
+
Leu
TAA
[Ensembl]
¡û
>C151102889
LN515398
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae type strain: F38 [LN515398]
519407
519495
+
Leu
TAA
[Ensembl]
¡û
>C151102918
LN515399
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae ILRI181 [LN515399]
519568
519656
+
Leu
TAA
[Ensembl]
¡û
>W2010768114
LATJ01000044
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides PO-67 [LATJ]
25221
25309
+
Leu
TAA
[ENA]
¡û
>W2010768782
LAUU01000008
Mycoplasmatota
Mycoplasma leachii 06049 [LAUU]
138195
138107
-
Leu
TAA
[ENA]
¡û
>W2010768798
LAUV01000018
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides B345/93 [LAUV]
25221
25309
+
Leu
TAA
[ENA]
¡û
>W2010768829
LAUW01000022
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides C425/93 [LAUW]
25221
25309
+
Leu
TAA
[ENA]
¡û
>W2010768870
LAUX01000159
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides KH3J [LAUX]
11
99
+
Leu
TAA
[ENA]
¡û
>W2010768892
LAUY01000044
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides str. Gemu Goffa [LAUY]
25220
25308
+
Leu
TAA
[ENA]
¡û
>W2011978100
VCPG01000001
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Apf9 [VCPG]
660142
660054
-
Leu
TAA
[ENA]
¡û
>W2011978130
VCPH01000001
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides AP108 [VCPH]
660148
660060
-
Leu
TAA
[ENA]
¡û
>C201101295
CP041711
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae AMRC-C758 [CP041711]
519460
519548
+
Leu
TAA
-
¡û
>C211022626
AP024602
Mycoplasmatota
Mycoplasma mycoides Caprivi [AP024602]
351760
351848
+
Leu
TAA
-
¡û
>C211248466
CP068548
Mycoplasmatota
Mycoplasma mycoides subsp. capri Ker.TCR. LT [CP068548]
649744
649656
-
Leu
TAA
-
¡û
>C231104981
CP065574
Mycoplasmatota
Mycoplasma mycoides subsp. capri Wi8079 [CP065574]
596652
596564
-
Leu
TAA
-
¡û
>C231105011
CP065575
Mycoplasmatota
Mycoplasma mycoides subsp. capri My-I [CP065575]
666848
666760
-
Leu
TAA
-
¡û
>C231105041
CP065576
Mycoplasmatota
Mycoplasma mycoides subsp. capri My-325 [CP065576]
656720
656632
-
Leu
TAA
-
¡û
>C231105071
CP065577
Mycoplasmatota
Mycoplasma mycoides subsp. capri M-18 [CP065577]
659477
659389
-
Leu
TAA
-
¡û
>C231105101
CP065578
Mycoplasmatota
Mycoplasma mycoides subsp. capri IVB-X [CP065578]
656647
656559
-
Leu
TAA
-
¡û
>C231105131
CP065579
Mycoplasmatota
Mycoplasma mycoides subsp. capri G1313.94 [CP065579]
627123
627035
-
Leu
TAA
-
¡û
>C231105161
CP065580
Mycoplasmatota
Mycoplasma mycoides subsp. capri G1283.94 [CP065580]
630135
630047
-
Leu
TAA
-
¡û
>C231105177
CP065581
Mycoplasmatota
Mycoplasma mycoides subsp. capri PG3 [CP065581]
456304
456392
+
Leu
TAA
-
¡û
>C231105221
CP065582
Mycoplasmatota
Mycoplasma mycoides subsp. capri 83/93 [CP065582]
597457
597369
-
Leu
TAA
-
¡û
>C231105251
CP065583
Mycoplasmatota
Mycoplasma mycoides subsp. capri 80/93 [CP065583]
593719
593631
-
Leu
TAA
-
¡û
>C231105281
CP065584
Mycoplasmatota
Mycoplasma mycoides subsp. capri 7730 [CP065584]
653273
653185
-
Leu
TAA
-
¡û
>C231105311
CP065586
Mycoplasmatota
Mycoplasma mycoides subsp. capri 171/93 [CP065586]
602802
602714
-
Leu
TAA
-
¡û
>C231105341
CP065588
Mycoplasmatota
Mycoplasma mycoides subsp. capri M-5 [CP065588]
659479
659391
-
Leu
TAA
-
¡û
>C231113433
CP068010
Mycoplasmatota
Mycoplasma mycoides subsp. capri 152/93 [CP068010]
461252
461340
+
Leu
TAA
-
¡û
>C231289058
CP091032
Mycoplasmatota
Mycoplasma feriruminatoris G5847 [CP091032]
452799
452887
+
Leu
TAA
-
¡û
>C231329161
CP093215
Mycoplasmatota
Mycoplasma mycoides subsp. capri HN-A [CP093215]
572215
572303
+
Leu
TAA
-
¡û
>C231435338
CP101367
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae zly1309F [CP101367]
519643
519731
+
Leu
TAA
-
¡û
>C231443163
CP101903
Mycoplasmatota
Mycoplasma capricolum subsp. capricolum HN-B [CP101903]
862620
862708
+
Leu
TAA
-
¡û
>C231483408
CP104008
Mycoplasmatota
Mycoplasma feriruminatoris L14822 [CP104008]
415978
416066
+
Leu
TAA
-
¡û
>C231483438
CP104009
Mycoplasmatota
Mycoplasma feriruminatoris L15220 [CP104009]
405805
405893
+
Leu
TAA
-
¡û
>C231550051
CP113495
Mycoplasmatota
Mycoplasma feriruminatoris F11561 [CP113495]
403124
403212
+
Leu
TAA
-
¡û
>C231550081
CP113496
Mycoplasmatota
Mycoplasma feriruminatoris L13461 [CP113496]
411470
411558
+
Leu
TAA
-
¡û
>C231550111
CP113497
Mycoplasmatota
Mycoplasma feriruminatoris L14815 [CP113497]
414696
414784
+
Leu
TAA
-
¡û
>C231550141
CP113498
Mycoplasmatota
Mycoplasma feriruminatoris L15181 [CP113498]
401945
402033
+
Leu
TAA
-
¡û
>C231550171
CP113499
Mycoplasmatota
Mycoplasma feriruminatoris L15407 [CP113499]
413146
413234
+
Leu
TAA
-
¡û
>C231550201
CP113500
Mycoplasmatota
Mycoplasma feriruminatoris L15568 [CP113500]
409081
409169
+
Leu
TAA
-
¡û
>C231642626
CP121686
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 14020 [CP121686]
519720
519808
+
Leu
TAA
-
¡û
>C241034301
CP030266
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae JF6037 [CP030266]
519557
519645
+
Leu
TAA
-
¡û
>C241035520
CP031287
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae JF6034 [CP031287]
519558
519646
+
Leu
TAA
-
¡û
>C241035549
CP031288
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae JF6042 [CP031288]
519558
519646
+
Leu
TAA
-
¡û
>C241054872
CP040917
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 04012 [CP040917]
519456
519544
+
Leu
TAA
-
¡û
>C241059779
CP041700
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 05021 [CP041700]
518879
518967
+
Leu
TAA
-
¡û
>C241059808
CP041701
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 8991 [CP041701]
519475
519563
+
Leu
TAA
-
¡û
>C241059837
CP041702
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 12002 [CP041702]
516936
517024
+
Leu
TAA
-
¡û
>C241059866
CP041703
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae C550/1 [CP041703]
516945
517033
+
Leu
TAA
-
¡û
>C241059895
CP041704
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae Bagamoyo [CP041704]
519563
519651
+
Leu
TAA
-
¡û
>C241059924
CP041705
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 95043 [CP041705]
518882
518970
+
Leu
TAA
-
¡û
>C241059953
CP041706
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae Erer [CP041706]
519450
519538
+
Leu
TAA
-
¡û
>C241059982
CP041707
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae Yatta/B [CP041707]
519460
519548
+
Leu
TAA
-
¡û
>C241060010
CP041708
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 438LP [CP041708]
518890
518978
+
Leu
TAA
-
¡û
>C241060039
CP041709
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae C5 [CP041709]
519472
519560
+
Leu
TAA
-
¡û
>C241060068
CP041710
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 2/90 [CP041710]
519463
519551
+
Leu
TAA
-
¡û
>C241060097
CP041712
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 033C1 [CP041712]
519478
519566
+
Leu
TAA
-
¡û
>C241166375
CP054256
Mycoplasmatota
Mycoplasma mycoides T1/44 GP [CP054256]
672543
672631
+
Leu
TAA
-
¡û
>C10109490
CP002107
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides SC str. Gladysdale [CP002107]
660722
660634
-
Leu
TAA
[Ensembl]
¡û
>C11114582
FR668087
Mycoplasmatota
Mycoplasma leachii 99/014/6 [FR668087]
266133
266221
+
Leu
TAA
[Ensembl]
¡û
>C11114612
CP002108
Mycoplasmatota
Mycoplasma leachii PG50 [CP002108]
497802
497890
+
Leu
TAA
[Ensembl]
¡û
>C11114819
CP001621
Mycoplasmatota
Mycoplasma mycoides [CP001621]
611795
611707
-
Leu
TAA
[Ensembl]
¡û
>W1511508405
JXQB01000001
Mycoplasmatota
Mycoplasma capricolum subsp. capricolum GM508D [JXQB]
971647
971559
-
Leu
TAA
[ENA]
¡û
>W11141013
AENG01000001
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae M1601 [AENG]
519578
519666
+
Leu
TAA
[ENA]
¡û
>W1511565159
LAEW01000001
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides B237 [LAEW]
660187
660099
-
Leu
TAA
[ENA]
¡û
>W1511565190
LAEX01000007
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Afade [LAEX]
50858
50770
-
Leu
TAA
[ENA]
¡û
>W1511594884
LBMF01000004
Mycoplasmatota
Mycoplasma capricolum subsp. capricolum 14DL0024 [LBMF]
28310
28398
+
Leu
TAA
[ENA]
¡û
>C121001677
CP001668
Mycoplasmatota
Mycoplasma mycoides [CP001668]
620440
620352
-
Leu
TAA
-
¡û
>C121016897
FQ377874
Mycoplasmatota
Mycoplasma mycoides subsp. capri LC str. 95010 [FQ377874]
682088
682000
-
Leu
TAA
[Ensembl]
¡û
>C161033065
CP011260
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Ben1 [CP011260]
637918
637830
-
Leu
TAA
-
¡û
>C161033094
CP011261
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Ben50 [CP011261]
642397
642309
-
Leu
TAA
-
¡û
>C161033124
CP011262
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Ben181 [CP011262]
636696
636608
-
Leu
TAA
-
¡û
>C161033153
CP011263
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Ben326 [CP011263]
628641
628553
-
Leu
TAA
-
¡û
>C161033182
CP011264
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Ben468 [CP011264]
643445
643357
-
Leu
TAA
-
¡û
>C161071661
CP014346
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides T1/44 [CP014346]
672538
672626
+
Leu
TAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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