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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.425593 (138 seq.)
>W1710926030
LODR01000003
Bacillota
Megasphaera sp. DJF_B143 [LODR]
41440
41367
-
Gly
CCC
[ENA]
¡û
>W1711055691
LRVC01000108
Bacillota
Megasphaera sp. MJR8396C [LRVC]
23259
23332
+
Gly
CCC
[ENA]
¡û
>W131109492
APHX01000004
Bacillota
Megasphaera sp. BL7 [APHX]
76873
76800
-
Gly
CCC
[ENA]
¡û
>W1711120562
LUGJ01000035
Bacillota
Megasphaera sp. DISK 18 [LUGJ]
64910
64983
+
Gly
CCC
[ENA]
¡û
>W131251612
CAVO010000125
Bacillota
Megasphaera massiliensis NP3 [CAVO]
23768
23841
+
Gly
CCC
[ENA]
¡û
>W1711658802
MQNM01000049
Bacillota
Megasphaera cerevisiae [MQNM]
2609
2536
-
Gly
CCC
[ENA]
¡û
>W1712038466
NFIY01000025
Bacillota
Megasphaera sp. An286 [NFIY]
9572
9645
+
Gly
CCC
[ENA]
¡û
>WENV180118821
OASD01001181
[OASD] human gut metagenome; ENVO:feces
8351
8424
+
Gly
CCC
[ENA]
¢þ
>WENV180235152
OBCT01002886
[OBCT] human gut metagenome; human gut
2229
2302
+
Gly
CCC
[ENA]
¢þ
>WENV180289609
OBIU01000031
[OBIU] human gut metagenome; human gut
101935
102008
+
Gly
CCC
[ENA]
¢þ
>WENV180338773
OBLI01001054
[OBLI] pig gut metagenome; faeces
22548
22621
+
Gly
CCC
[ENA]
¢þ
>WENV180574881
OCLX01010850
[OCLX] human gut metagenome; human gut
522
595
+
Gly
CCC
[ENA]
¢þ
>WENV180575683
OCLY01002795
[OCLY] human gut metagenome; human gut
2125
2052
-
Gly
CCC
[ENA]
¢þ
>WENV180578762
OCMC01001470
[OCMC] human gut metagenome; human gut
2619
2692
+
Gly
CCC
[ENA]
¢þ
>WENV180597120
OCPK01003403
[OCPK] human gut metagenome; ENVO:feces
1712
1639
-
Gly
CCC
[ENA]
¢þ
>WENV180737729
ODHC01012360
[ODHC] human metagenome; G_DNA_Stool
1584
1657
+
Gly
CCC
[ENA]
¢þ
>WENV180743017
ODHH01065668
[ODHH] human metagenome; G_DNA_Stool
398
471
+
Gly
CCC
[ENA]
¢þ
>WENV180841021
ODKJ01028679
[ODKJ] human metagenome; G_DNA_Stool
795
868
+
Gly
CCC
[ENA]
¢þ
>WENV181337033
OFME01000288
[OFME] human gut metagenome; human gut
19355
19282
-
Gly
CCC
[ENA]
¢þ
>WENV181396141
OFSC01000392
[OFSC] human gut metagenome; human gut
22673
22746
+
Gly
CCC
[ENA]
¢þ
>WENV181420934
OGCN01008929
[OGCN] human gut metagenome; human gut
4133
4206
+
Gly
CCC
[ENA]
¢þ
>WENV181434912
OGDF01001816
[OGDF] human gut metagenome; human gut
74
1
-
Gly
CCC
[ENA]
¢þ
>WENV181464372
OGEP01000671
[OGEP] metagenome; Human gut stool
9674
9601
-
Gly
CCC
[ENA]
¢þ
>WENV181489058
OGFR01008968
[OGFR] metagenome; Human gut stool
1459
1386
-
Gly
CCC
[ENA]
¢þ
>W141147502
AWXA01000026
Bacillota
Megasphaera vaginalis (ex Srinivasan et al. 2021) BV3C16-1 [AWXA]
402
329
-
Gly
CCC
[ENA]
¡û
>WENV181506221
OGGM01000357
[OGGM] metagenome; Human gut stool
29865
29938
+
Gly
CCC
[ENA]
¢þ
>WENV181511849
OGGS01010857
[OGGS] metagenome; Human gut stool
203
130
-
Gly
CCC
[ENA]
¢þ
>WENV181555302
OGIT01000830
[OGIT] metagenome; Human gut stool
1007
1080
+
Gly
CCC
[ENA]
¢þ
>WENV181645219
OGNM01050181
[OGNM] metagenome; Human gut stool
89
16
-
Gly
CCC
[ENA]
¢þ
>WENV181676218
OGOP01047210
[OGOP] human gut metagenome; faeces
961
1034
+
Gly
CCC
[ENA]
¢þ
>WENV181775279
OGRF01001663
[OGRF] human gut metagenome; faeces
13982
14055
+
Gly
CCC
[ENA]
¢þ
>WENV181822698
OGUG01043395
[OGUG] metagenome; Human gut stool
137
64
-
Gly
CCC
[ENA]
¢þ
>WENV181872050
OGWZ01001128
[OGWZ] human gut metagenome; faeces
3019
2946
-
Gly
CCC
[ENA]
¢þ
>WENV181876463
OGXC01011723
[OGXC] human gut metagenome; faeces
128
55
-
Gly
CCC
[ENA]
¢þ
>WENV181885949
OGXK01001691
[OGXK] human gut metagenome; faeces
7514
7587
+
Gly
CCC
[ENA]
¢þ
>WENV181905528
OGXY01000445
[OGXY] human gut metagenome; faeces
9297
9224
-
Gly
CCC
[ENA]
¢þ
>WENV181911030
OGYD01000212
[OGYD] human gut metagenome; faeces
9242
9169
-
Gly
CCC
[ENA]
¢þ
>WENV181912979
OGYE01002066
[OGYE] human gut metagenome; faeces
3191
3264
+
Gly
CCC
[ENA]
¢þ
>WENV181924037
OGYL01003949
[OGYL] human gut metagenome; faeces
3943
3870
-
Gly
CCC
[ENA]
¢þ
>WENV181931351
OGYQ01000266
[OGYQ] human gut metagenome; faeces
9401
9328
-
Gly
CCC
[ENA]
¢þ
>WENV181934226
OGYT01003031
[OGYT] human gut metagenome; faeces
3072
3145
+
Gly
CCC
[ENA]
¢þ
>WENV181944864
OGZB01000257
[OGZB] human gut metagenome; faeces
28472
28545
+
Gly
CCC
[ENA]
¢þ
>WENV181952781
OGZI01000920
[OGZI] human gut metagenome; faeces
9556
9483
-
Gly
CCC
[ENA]
¢þ
>WENV181959353
OGZM01006133
[OGZM] human gut metagenome; faeces
3270
3343
+
Gly
CCC
[ENA]
¢þ
>WENV181969983
OGZX01001260
[OGZX] human gut metagenome; faeces
3149
3076
-
Gly
CCC
[ENA]
¢þ
>WENV181972103
OGZZ01011408
[OGZZ] human gut metagenome; faeces
2492
2419
-
Gly
CCC
[ENA]
¢þ
>WENV181980860
OHAG01000106
[OHAG] human gut metagenome; faeces
73376
73449
+
Gly
CCC
[ENA]
¢þ
>WENV182001339
OHAY01003648
[OHAY] human gut metagenome; faeces
9270
9197
-
Gly
CCC
[ENA]
¢þ
>WENV182166136
OHMP01000929
[OHMP] human gut metagenome; feces
170
97
-
Gly
CCC
[ENA]
¢þ
>WENV182207927
OHPX01000082
[OHPX] human gut metagenome; feces
78031
78104
+
Gly
CCC
[ENA]
¢þ
>WENV182276028
OHUN01041833
[OHUN] human gut metagenome; feces
113
40
-
Gly
CCC
[ENA]
¢þ
>WENV182281422
OHVB01002849
[OHVB] human gut metagenome; feces
4113
4186
+
Gly
CCC
[ENA]
¢þ
>WENV182284368
OHVL01017296
[OHVL] human gut metagenome; feces
530
603
+
Gly
CCC
[ENA]
¢þ
>WENV182291306
OHVZ01000953
[OHVZ] human gut metagenome; feces
113
40
-
Gly
CCC
[ENA]
¢þ
>WENV182296179
OHWG01000922
[OHWG] human gut metagenome; feces
8837
8910
+
Gly
CCC
[ENA]
¢þ
>WENV182334415
OHZM01010928
[OHZM] human gut metagenome; feces
806
879
+
Gly
CCC
[ENA]
¢þ
>WENV182360322
OICB01001383
[OICB] human gut metagenome; feces
6745
6818
+
Gly
CCC
[ENA]
¢þ
>WENV182361912
OICD01002053
[OICD] human gut metagenome; feces
7544
7471
-
Gly
CCC
[ENA]
¢þ
>WENV182364411
OICH01002806
[OICH] human gut metagenome; feces
3802
3729
-
Gly
CCC
[ENA]
¢þ
>WENV182370794
OICT01004447
[OICT] human gut metagenome; feces
2196
2269
+
Gly
CCC
[ENA]
¢þ
>WENV182371669
OICU01024979
[OICU] human gut metagenome; feces
181
108
-
Gly
CCC
[ENA]
¢þ
>WENV182375940
OIDD01001381
[OIDD] human gut metagenome; feces
3666
3593
-
Gly
CCC
[ENA]
¢þ
>WENV182510168
OIWK01000919
[OIWK] human gut metagenome; faeces
25247
25320
+
Gly
CCC
[ENA]
¢þ
>WENV182525538
OIWT01002841
[OIWT] human gut metagenome; faeces
6739
6666
-
Gly
CCC
[ENA]
¢þ
>WENV182659437
OJML01013524
[OJML] human gut metagenome; feces
487
414
-
Gly
CCC
[ENA]
¢þ
>WENV182769452
OJRW01002452
[OJRW] human gut metagenome; human gut
3589
3662
+
Gly
CCC
[ENA]
¢þ
>WENV182772325
OJRY01001001
[OJRY] human gut metagenome; human gut
20393
20320
-
Gly
CCC
[ENA]
¢þ
>WENV182776141
OJSB01002485
[OJSB] human gut metagenome; human gut
6018
5945
-
Gly
CCC
[ENA]
¢þ
>WENV182777579
OJSC01002856
[OJSC] human gut metagenome; human gut
9043
8970
-
Gly
CCC
[ENA]
¢þ
>WENV182779418
OJSD01003514
[OJSD] human gut metagenome; human gut
3589
3662
+
Gly
CCC
[ENA]
¢þ
>WENV182782807
OJSF01002197
[OJSF] human gut metagenome; human gut
3589
3662
+
Gly
CCC
[ENA]
¢þ
>WENV182783840
OJSG01001648
[OJSG] human gut metagenome; human gut
3587
3660
+
Gly
CCC
[ENA]
¢þ
>WENV182784930
OJSH01002329
[OJSH] human gut metagenome; human gut
3589
3662
+
Gly
CCC
[ENA]
¢þ
>WENV182786024
OJSI01001848
[OJSI] human gut metagenome; human gut
9043
8970
-
Gly
CCC
[ENA]
¢þ
>WENV182787872
OJSK01002094
[OJSK] human gut metagenome; human gut
9043
8970
-
Gly
CCC
[ENA]
¢þ
>WENV182789100
OJSL01003260
[OJSL] human gut metagenome; human gut
6136
6063
-
Gly
CCC
[ENA]
¢þ
>WENV182790480
OJSM01018150
[OJSM] human gut metagenome; human gut
7
80
+
Gly
CCC
[ENA]
¢þ
>WENV182791510
OJSN01007111
[OJSN] human gut metagenome; human gut
286
213
-
Gly
CCC
[ENA]
¢þ
>WENV182795889
OJSQ01003083
[OJSQ] human gut metagenome; human gut
3589
3662
+
Gly
CCC
[ENA]
¢þ
>WENV182802027
OJUG01003940
[OJUG] human gut metagenome; human gut
3589
3662
+
Gly
CCC
[ENA]
¢þ
>WENV182872554
OKRV01008868
[OKRV] human gut metagenome; faeces
3265
3338
+
Gly
CCC
[ENA]
¢þ
>WENV182875082
OKRX01000115
[OKRX] human gut metagenome; faeces
50137
50210
+
Gly
CCC
[ENA]
¢þ
>WENV182882441
OKSB01000502
[OKSB] human gut metagenome; faeces
2740
2813
+
Gly
CCC
[ENA]
¢þ
>WENV182890138
OKSF01007099
[OKSF] human gut metagenome; faeces
5
78
+
Gly
CCC
[ENA]
¢þ
>WENV182921319
OKUB01009072
[OKUB] human gut metagenome; feces
23
96
+
Gly
CCC
[ENA]
¢þ
>WENV182924838
OKUI01001430
[OKUI] human gut metagenome; feces
4341
4268
-
Gly
CCC
[ENA]
¢þ
>WENV182926611
OKUM01000543
[OKUM] human gut metagenome; feces
7760
7687
-
Gly
CCC
[ENA]
¢þ
>WENV182928864
OKUO01022377
[OKUO] human gut metagenome; feces
313
240
-
Gly
CCC
[ENA]
¢þ
>WENV182929417
OKUQ01000894
[OKUQ] human gut metagenome; feces
105
32
-
Gly
CCC
[ENA]
¢þ
>WENV182932504
OKUU01009136
[OKUU] human gut metagenome; feces
585
658
+
Gly
CCC
[ENA]
¢þ
>WENV182941178
OKVG01000601
[OKVG] human gut metagenome; human gut
323
250
-
Gly
CCC
[ENA]
¢þ
>WENV183023795
OLFS01004972
[OLFS] human gut metagenome; faeces
2736
2663
-
Gly
CCC
[ENA]
¢þ
>WENV183026376
OLFU01001501
[OLFU] human gut metagenome; faeces
4791
4718
-
Gly
CCC
[ENA]
¢þ
>WENV183028108
OLFV01001027
[OLFV] human gut metagenome; faeces
9088
9015
-
Gly
CCC
[ENA]
¢þ
>WENV183028649
OLFV01004359
[OLFV] human gut metagenome; faeces
2208
2281
+
Gly
CCC
[ENA]
¢þ
>WENV183029521
OLFW01000477
[OLFW] human gut metagenome; faeces
24639
24712
+
Gly
CCC
[ENA]
¢þ
>WENV183033066
OLFY01001381
[OLFY] human gut metagenome; faeces
5804
5731
-
Gly
CCC
[ENA]
¢þ
>WENV183053366
OLGL01009975
[OLGL] human gut metagenome; faeces
2606
2679
+
Gly
CCC
[ENA]
¢þ
>WENV183080725
OLIY01009509
[OLIY] human gut metagenome; human gut
2582
2655
+
Gly
CCC
[ENA]
¢þ
>WENV183089246
OLJW01003269
[OLJW] human gut metagenome; human gut
9043
8970
-
Gly
CCC
[ENA]
¢þ
>WENV183091646
OLKG01001935
[OLKG] human gut metagenome; human gut
3589
3662
+
Gly
CCC
[ENA]
¢þ
>WENV183207772
OLQA01045883
[OLQA] human gut metagenome; faeces
193
120
-
Gly
CCC
[ENA]
¢þ
>WENV183269936
OLRV01002227
[OLRV] human gut metagenome; faeces
5181
5108
-
Gly
CCC
[ENA]
¢þ
>WENV183325874
OLVZ01002868
[OLVZ] human gut metagenome; faeces
6258
6331
+
Gly
CCC
[ENA]
¢þ
>WENV183325955
OLVZ01003756
[OLVZ] human gut metagenome; faeces
6652
6579
-
Gly
CCC
[ENA]
¢þ
>WENV183332974
OLWD01020553
[OLWD] human gut metagenome; feces
128
55
-
Gly
CCC
[ENA]
¢þ
>WENV183344699
OLWQ01004752
[OLWQ] human gut metagenome; feces
2386
2313
-
Gly
CCC
[ENA]
¢þ
>WENV183394427
OLZG01000707
[OLZG] human gut metagenome; feces
257
184
-
Gly
CCC
[ENA]
¢þ
>WENV183485628
OMFQ01000393
[OMFQ] human gut metagenome; feces
4812
4739
-
Gly
CCC
[ENA]
¢þ
>WENV183527406
ONZW01000430
[ONZW] human gut metagenome; human gut
29626
29699
+
Gly
CCC
[ENA]
¢þ
>WENV183552585
OOBJ01013890
[OOBJ] human gut metagenome; human gut
2024
2097
+
Gly
CCC
[ENA]
¢þ
>WENV183580734
OOCN01000329
[OOCN] human gut metagenome; human gut
44986
45059
+
Gly
CCC
[ENA]
¢þ
>WENV183608694
OODQ01000068
[OODQ] human gut metagenome; human gut
45615
45688
+
Gly
CCC
[ENA]
¢þ
>WENV183637563
OQVH01000514
[OQVH] human gut metagenome; human gut
6028
5955
-
Gly
CCC
[ENA]
¢þ
>WENV170075717
CDZT01043713
[CDZT] gut metagenome; human stools
3954
3881
-
Gly
CCC
[ENA]
¢þ
>WENV170077212
CDZU01024566
[CDZU] gut metagenome; human stools
44978
45051
+
Gly
CCC
[ENA]
¢þ
>WENV170777661
LXOW01308893
[LXOW] bovine gut metagenome; Cow rumen
458
531
+
Gly
CCC
[ENA]
¢þ
>C181011490
CP011940
Bacillota
Megasphaera hexanoica MH [CP011940]
2530764
2530837
+
Gly
CCC
-
¡û
>C181156458
CP027569
Bacillota
Megasphaera elsdenii NCIMB702410 [CP027569]
1320334
1320261
-
Gly
CCC
-
¡û
>C181156531
CP027570
Bacillota
Megasphaera elsdenii DSM 20460 ATCC 25940 [CP027570]
1142414
1142341
-
Gly
CCC
-
¡û
>C181178708
CP029462
Bacillota
Megasphaera stantonii AJH120 [CP029462]
837879
837806
-
Gly
CCC
-
¡û
>W141559838
JHXC01000008
Bacillota
Megasphaera elsdenii T81 [JHXC]
1206
1279
+
Gly
CCC
[ENA]
¡û
>W1910212241
FMIV01000002
Bacillota
Caecibacter massiliensis Marseille-P2974 [FMIV]
850571
850644
+
Gly
CCC
[ENA]
¡û
>W1911179397
NQMW01000003
Bacillota
Megasphaera elsdenii indica [NQMW]
120323
120250
-
Gly
CCC
[ENA]
¡û
>W1911192118
NQXW01000032
Bacillota
Megasphaera sp. ASD88 [NQXW]
12448
12375
-
Gly
CCC
[ENA]
¡û
>W1911502822
OEQB01000002
Bacillota
Megasphaera vaginalis (ex Bordigoni et al. 2020) Marseille-P4857 [OEQB]
172589
172516
-
Gly
CCC
[ENA]
¡û
>W1810272723
PSNP01000016
Bacillota
Megasphaera stantonii AJH120 [PSNP]
49447
49374
-
Gly
CCC
[ENA]
¡û
>W1810820849
QSFA01000003
Bacillota
Megasphaera sp. AM44-1BH [QSFA]
79849
79922
+
Gly
CCC
[ENA]
¡û
>W1511353898
JRPS01000013
Bacillota
Megasphaera elsdenii 24-50 [JRPS]
130693
130620
-
Gly
CCC
[ENA]
¡û
>W1511656940
LEKT01000062
Bacillota
Megasphaera cerevisiae DSM 20462 [LEKT]
14653
14726
+
Gly
CCC
[ENA]
¡û
>C161021165
CP009240
Bacillota
Megasphaera elsdenii 14-14 [CP009240]
916335
916262
-
Gly
CCC
-
¡û
>C161104379
HE576794
Bacillota
Megasphaera elsdenii DSM 20460 [HE576794]
877120
877047
-
Gly
CCC
[Ensembl]
¡û
>W1610783635
LODR01000003
Bacillota
Megasphaera sp. DJF_B143 [LODR]
41440
41367
-
Gly
CCC
[ENA]
¡û
>W1610896737
LRVC01000108
Bacillota
Megasphaera sp. MJR8396C [LRVC]
23259
23332
+
Gly
CCC
[ENA]
¡û
>W1610931759
LUGJ01000035
Bacillota
Megasphaera sp. DISK 18 [LUGJ]
64910
64983
+
Gly
CCC
[ENA]
¡û
>W1710564605
FOQP01000008
Bacillota
Megasphaera elsdenii [FOQP]
74484
74411
-
Gly
CCC
[ENA]
¡û
>W1710589758
FRAK01000006
Bacillota
Megasphaera elsdenii [FRAK]
8012
7939
-
Gly
CCC
[ENA]
¡û
>W1710601291
FUXD01000084
Bacillota
Megasphaera cerevisiae DSM 20462 [FUXD]
2577
2504
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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