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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.425841 (66 seq.)
>W1710996392
LQBJ01000016
Actinomycetota
Kocuria palustris [LQBJ]
149443
149515
+
Val
CAC
[ENA]
¡û
>W1710996411
LQBK01000009
Actinomycetota
Kocuria polaris [LQBK]
44450
44524
+
Val
CAC
[ENA]
¡û
>W131060649
ANHZ02000014
Actinomycetota
Kocuria palustris PEL [ANHZ]
139866
139938
+
Val
CAC
[ENA]
¡û
>W1711491790
MKJW01000077
Actinomycetota
Kocuria sp. CNJ-770 [MKJW]
24809
24735
-
Val
CAC
[ENA]
¡û
>WENV180728311
ODGU01038118
[ODGU] human metagenome; G_DNA_Supragingival plaque
331
403
+
Val
CAC
[ENA]
¢þ
>WENV180736062
ODHB01004163
[ODHB] human metagenome; G_DNA_Supragingival plaque
506
578
+
Val
CAC
[ENA]
¢þ
>WENV180751095
ODHS01021238
[ODHS] human metagenome; G_DNA_Supragingival plaque
222
150
-
Val
CAC
[ENA]
¢þ
>WENV180777229
ODIL01000547
[ODIL] human metagenome; G_DNA_Supragingival plaque
3303
3375
+
Val
CAC
[ENA]
¢þ
>WENV180796765
ODJB01013312
[ODJB] human metagenome; G_DNA_Supragingival plaque
2743
2671
-
Val
CAC
[ENA]
¢þ
>WENV180803810
ODJG01000074
[ODJG] human metagenome; G_DNA_Supragingival plaque
76721
76649
-
Val
CAC
[ENA]
¢þ
>WENV180832567
ODKC01002285
[ODKC] human metagenome; G_DNA_Supragingival plaque
10123
10051
-
Val
CAC
[ENA]
¢þ
>WENV180834104
ODKD01002940
[ODKD] human metagenome; G_DNA_Supragingival plaque
2990
2918
-
Val
CAC
[ENA]
¢þ
>WENV180846499
ODKT01012556
[ODKT] human metagenome; G_DNA_Supragingival plaque
297
369
+
Val
CAC
[ENA]
¢þ
>WENV180860452
ODLD01084773
[ODLD] human metagenome; G_DNA_Supragingival plaque
301
229
-
Val
CAC
[ENA]
¢þ
>WENV180933996
ODTR01010224
[ODTR] human metagenome; G_DNA_Supragingival plaque
95
23
-
Val
CAC
[ENA]
¢þ
>WENV180938545
ODTX01003002
[ODTX] human metagenome; G_DNA_Supragingival plaque
1443
1515
+
Val
CAC
[ENA]
¢þ
>WENV180944133
ODUC01008448
[ODUC] human metagenome; G_DNA_Supragingival plaque
1443
1515
+
Val
CAC
[ENA]
¢þ
>WENV180958839
ODUL01069823
[ODUL] human metagenome; G_DNA_Supragingival plaque
96
24
-
Val
CAC
[ENA]
¢þ
>WENV180973824
ODUW01020745
[ODUW] human metagenome; G_DNA_Supragingival plaque
137
65
-
Val
CAC
[ENA]
¢þ
>WENV180984054
ODVF01093727
[ODVF] human metagenome; G_DNA_Supragingival plaque
300
372
+
Val
CAC
[ENA]
¢þ
>WENV181009060
ODWE01026862
[ODWE] human metagenome; G_DNA_Supragingival plaque
1442
1514
+
Val
CAC
[ENA]
¢þ
>WENV181029250
ODXF01000034
[ODXF] human metagenome; G_DNA_Supragingival plaque
28871
28799
-
Val
CAC
[ENA]
¢þ
>WENV181063763
ODYP01003194
[ODYP] human metagenome; G_DNA_Supragingival plaque
6050
5978
-
Val
CAC
[ENA]
¢þ
>WENV181070611
OEAE01003998
[OEAE] human metagenome; G_DNA_Supragingival plaque
1446
1518
+
Val
CAC
[ENA]
¢þ
>WENV181077670
OEAP01102739
[OEAP] human metagenome; G_DNA_Supragingival plaque
314
386
+
Val
CAC
[ENA]
¢þ
>WENV181082125
OEAT01000006
[OEAT] human metagenome; G_DNA_Supragingival plaque
120630
120558
-
Val
CAC
[ENA]
¢þ
>WENV181090952
OEBC01007170
[OEBC] human metagenome; G_DNA_Supragingival plaque
3703
3775
+
Val
CAC
[ENA]
¢þ
>WENV181101182
OECM01010277
[OECM] human metagenome; G_DNA_Buccal mucosa
127
55
-
Val
CAC
[ENA]
¢þ
>WENV181107136
OEEI01002364
[OEEI] human metagenome; G_DNA_Supragingival plaque
1412
1484
+
Val
CAC
[ENA]
¢þ
>WENV181121311
OEFL01002132
[OEFL] human metagenome; G_DNA_Supragingival plaque
7125
7053
-
Val
CAC
[ENA]
¢þ
>WENV181123881
OEFQ01001961
[OEFQ] human metagenome; G_DNA_Supragingival plaque
4482
4410
-
Val
CAC
[ENA]
¢þ
>WENV181160289
OEIK01005086
[OEIK] human metagenome; G_DNA_Supragingival plaque
2836
2764
-
Val
CAC
[ENA]
¢þ
>WENV181179790
OEJT01017626
[OEJT] human metagenome; G_DNA_Supragingival plaque
114
42
-
Val
CAC
[ENA]
¢þ
>WENV181182053
OEJV01001830
[OEJV] human metagenome; G_DNA_Supragingival plaque
1443
1515
+
Val
CAC
[ENA]
¢þ
>W141279358
JAGG01000001
Actinomycetota
Microbacterium sp. KROCY2 [JAGG]
1833812
1833884
+
Val
CAC
[ENA]
¡û
>WENV183508584
OMHE01002626
[OMHE] human oral metagenome; human oral
60
132
+
Val
CAC
[ENA]
¢þ
>WENV183512011
OMJW01007705
[OMJW] termite gut metagenome; termite gut
394
466
+
Val
CAC
[ENA]
¢þ
>C181003355
AP017895
Actinomycetota
Rothia aeria JCM 11412 [AP017895]
2016346
2016274
-
Val
CAC
-
¡û
>C191134659
CP035103
Actinomycetota
Kocuria rosea ATCC 186 [CP035103]
2349608
2349680
+
Val
CAC
-
¡û
>W141531752
JHEL01000015
Actinomycetota
Curtobacterium sp. S6 [JHEL]
180334
180406
+
Val
CAC
[ENA]
¡û
>C191210290
LR134391
Actinomycetota
Kocuria rosea NCTC7514 [LR134391]
2055605
2055533
-
Val
CAC
-
¡û
>C191211723
LR134479
Actinomycetota
Rothia aeria NCTC10207 [LR134479]
1617407
1617335
-
Val
CAC
-
¡û
>C191212163
LR134487
Actinomycetota
Kocuria rosea NCTC7512 [LR134487]
1146739
1146811
+
Val
CAC
-
¡û
>W1910442296
FWFC01000005
Actinomycetota
Kocuria massiliensis Marseille-P3598 [FWFC]
604969
604897
-
Val
CAC
[ENA]
¡û
>W1910636714
LOMZ01000001
Actinomycetota
Kocuria flava S43 [LOMZ]
2841557
2841629
+
Val
CAC
[ENA]
¡û
>W1910872225
NDFM01000011
Actinomycetota
Rothia sp. Olga [NDFM]
35534
35606
+
Val
CAC
[ENA]
¡û
>W1911114571
NOIQ01000012
Actinomycetota
Rothia koreensis JCM 15915 [NOIQ]
12761
12689
-
Val
CAC
[ENA]
¡û
>W1911114624
NOIR01000005
Actinomycetota
Kocuria sp. 257 [NOIR]
33131
33059
-
Val
CAC
[ENA]
¡û
>W1911114654
NOIS01000002
Actinomycetota
Kocuria sp. 36 [NOIS]
536203
536131
-
Val
CAC
[ENA]
¡û
>W1911114730
NOIU01000002
Actinomycetota
Rothia halotolerans JCM 31975 [NOIU]
219426
219498
+
Val
CAC
[ENA]
¡û
>W1911245621
NSKF01000014
Actinomycetota
Kocuria sp. WN036 [NSKF]
87576
87648
+
Val
CAC
[ENA]
¡û
>W1810584695
QFBJ01000006
Actinomycetota
Kocuria rosea ATCC 186 [QFBJ]
148846
148774
-
Val
CAC
[ENA]
¡û
>W1810584735
QFBK01000010
Actinomycetota
Kocuria rosea ATCC 516 [QFBK]
106726
106654
-
Val
CAC
[ENA]
¡û
>W1810584792
QFBL01000009
Actinomycetota
Kocuria rosea ATCC 49321 [QFBL]
106656
106584
-
Val
CAC
[ENA]
¡û
>W1810700986
QMDP01000371
Actinomycetota
Kocuria rhizophila TNDT1 [QMDP]
1675
1747
+
Val
CAC
[ENA]
¡û
>C151095266
CP012507
Actinomycetota
Kocuria palustris MU14/1 [CP012507]
1568557
1568485
-
Val
CAC
-
¡û
>W1511316282
JPVS01000005
Actinomycetota
Rothia aeria C6D [JPVS]
141742
141816
+
Val
CAC
[ENA]
¡û
>W1511326130
JQHE01000011
Actinomycetota
Rothia aeria C6B [JQHE]
141735
141809
+
Val
CAC
[ENA]
¡û
>W1511638444
LDNX01000005
Actinomycetota
Kocuria sp. SM24M-10 [LDNX]
1493
1419
-
Val
CAC
[ENA]
¡û
>C161054307
CP013254
Actinomycetota
Kocuria flava HO-9041 [CP013254]
2099954
2099882
-
Val
CAC
[Ensembl]
¡û
>C161072594
CP014480
Actinomycetota
Kocuria turfanensis HO-9042 [CP014480]
162574
162500
-
Val
CAC
-
¡û
>W121062772
AJJQ01000012
Actinomycetota
Rothia aeria F0474 [AJJQ]
1386
1460
+
Val
CAC
[ENA]
¡û
>W1610112212
CZJR01000062
Actinomycetota
Kocuria palustris [CZJR]
22448
22376
-
Val
CAC
[ENA]
¡û
>W1610851049
LQBJ01000016
Actinomycetota
Kocuria palustris [LQBJ]
149443
149515
+
Val
CAC
[ENA]
¡û
>W1610851068
LQBK01000009
Actinomycetota
Kocuria polaris [LQBK]
44450
44524
+
Val
CAC
[ENA]
¡û
>W1710114916
CZJR01000062
Actinomycetota
Kocuria palustris [CZJR]
22448
22376
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK